Trichophyton verrucosum: TRV_00299
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Entry
TRV_00299 CDS
T01615
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tve
Trichophyton verrucosum
Pathway
tve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRV_00299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tve03019
]
TRV_00299
03012 Translation factors [BR:
tve03012
]
TRV_00299
Enzymes [BR:
tve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRV_00299
Messenger RNA biogenesis [BR:
tve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
TRV_00299
Translation factors [BR:
tve03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
TRV_00299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_N
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
PhoH
Motif
Other DBs
NCBI-GeneID:
9581774
NCBI-ProteinID:
XP_003025537
UniProt:
D4CZQ7
LinkDB
All DBs
AA seq
1193 aa
AA seq
DB search
MNSSPTESVIYPEPYSRLTETYARENAALPSSESLLALLTLLSKPESSLHTLSQMGIVEI
DTDVAKLSDIGAVMCKLYSAENAAYVFLVSALHTKGYLNKIAQSFKTLWDMRAHRFDLSD
VYHYASRFASLPEIHYRSTPEPGFTSYAQHEVRIELPGQNIKSVATGDFLPQVITEASRS
FIAQTPRQGIPGNHGRIKNDSTLTVDVAPNLLNFYLSKCDQSSEIESRCTQENFGSSMVY
YGTLYIDGKPVSKPVMADSAKSAKSLARLAGAVHLISKNPSLWPDFINEMRETSPVVHSV
SVSMSPETLSAIQTSLENVYYPSPRGQDNTKETCPNNIESLFPNVLASAVRQAESVDLPF
LPFSNRTLEESLDARNSLPARKHSKQILDTINEHTVSIIVGSTGSGKTSQIPQMVLEHFP
SSNIMVTQPRRVTTTTMARRVAFERGEALGKSVGYEIRWDAIKPSSNNGITYRTTGVMLL
DMLRRGDEILDTVSHIFVDETHERDTPTDLLLALLRREINRRSNASMPIPKIIIMTADPE
TAALETYMGAVSENGEPNPATRMVIPNSSHPVQRYFLEDILHSLFSKHSAEDLMPLLSDT
STSQHIAAEKDLITPEPSEGNDEAKLPIPNALLEEATANAPINEKEHFVPLGLTAATIAH
IAKTEEEGVILALFPGLDVMKRLETLLYDHPLGVDFSDRTKFQIFKLHSGLGDIDENVLR
PAKNGCRKIILSTNIAENSINIPEVRYVVDSGKKHDSVYDPSTGLRKVVGGWVDKLAIHQ
REACASRTGNGSYYATFTQSRYDALTRSTPPRIYVDEIETESLQLRATLPDLPLRDFMRQ
VPNPPSLDRLNSTTANLQSIGAIDNNGDITALGRILSLLPVPLKAGKMVMLGILLRCFEP
ALILGAATHARSLFIPSRSERWYNSPRRKFAGETNSDHIAILRAYRKINQISNKHGQEAA
RKYCLQQSMSHATYLDMELFISRITLTLRHLNLIPATESESGENVLNENSGDHSVLRALI
TATVTPNIAIKPSDSGGQWHTKRFPAAVVSNKSTNSFQKSWAGRMLAFNEALNFHSEADA
IMMDTTSVHPLMACLFGGNLSREDNALFLDSHLAVKIKSPDGSMESGSRAASAVVKARKL
IDKASEDFFNDLASNRSWAEAESDRRRLATEIKSIIDTLPDTRQSGPLIRKIP
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaattcctcgccgaccgaatctgttatatatccagagccatattccaggttgacggaa
acatacgctagggagaatgcggctttgccatcttctgaatcactcttggccttacttact
ctcctttcgaaaccagaatcctcactccatacactctcacaaatggggattgttgagatt
gatacggacgttgccaaactttctgatataggagctgttatgtgcaaattgtactctgca
gaaaatgccgcctacgtttttctcgtgtccgcacttcataccaagggttaccttaacaag
attgcacaatcattcaagaccttatgggacatgagagcgcaccgctttgatctatcagat
gtttaccattatgcttctcggtttgcatccttacctgagatacactaccgatccacgccg
gaacctggttttacgtcatacgcccagcatgaagttaggattgagttgccaggtcaaaat
atcaaatctgttgctacaggagatttccttccccaggtcatcactgaagcttctcgctcc
ttcatagctcaaacaccacgccagggtattccaggaaatcatgggcgaattaaaaacgat
tctactcttacggtggatgttgctccaaatcttctaaacttttacctctcaaaatgtgac
caatctagcgagattgaatcacgctgtacccaggaaaactttggctcttctatggtctac
tatgggacactttatatcgatggcaaacctgtatcaaaaccggtaatggctgactccgca
aaatcagcaaaatcccttgcaaggctcgcaggagccgttcatctcattagcaagaacccg
tctctctggccagactttataaatgagatgcgagaaacttcgcccgttgttcactccgtc
tctgtttcgatgtctcctgaaaccctctccgccatccaaacctcactcgaaaatgtttac
taccctagtcccagaggccaggataacactaaagagacctgtccgaacaatattgagtca
ctgtttccgaatgtccttgcttcagctgtgcgccaggccgagtccgttgatctacctttt
ctcccatttagcaaccgtacattggaggagtcgctcgacgcgcgaaattctttgcctgca
aggaaacactccaagcaaatactggatacgattaacgaacacactgttagcatcatagtt
ggatctacagggagtgggaaaacatctcaaattccccagatggtactggagcatttccct
agctccaacataatggtcacccagcctcgcagagttactactacgactatggcgcggcga
gttgcgtttgaacgtggcgaagcgcttgggaaatctgttggatatgaaattcgatgggat
gctataaagccgtcgtcaaacaacggtattacctatcgaacgaccggagttatgttactg
gatatgttacgaagaggcgatgagattttggacactgtatctcacatttttgttgatgaa
acacatgaacgtgatactcctacggaccttctcctagcgctattaaggagggagatcaac
cgacgttccaatgcatccatgccgattccaaagattataattatgactgcagaccccgaa
accgccgctcttgaaacctatatgggagctgtgtccgaaaatggagaacctaatccagca
actcgcatggtgatccccaattcctctcatcctgttcagcgttacttccttgaagacata
ctgcattctttattctccaagcattctgctgaagatttgatgcccttactctctgacaca
tcaacaagccaacatatcgcagccgaaaaggacttgatcactcctgaaccctcagaaggg
aatgacgaggctaagctgcctattcctaatgcattactagaggaggctacagccaacgcc
ccaatcaacgaaaaagagcattttgttcctcttgggctgactgctgctacaattgctcat
attgcgaaaaccgaagaggagggcgttatccttgctctttttcccggccttgatgtgatg
aagcgtcttgaaacgttactctacgaccatcctcttggagtggatttcagcgatcgaacc
aaatttcaaattttcaagttacactctggtctgggcgatatcgatgaaaatgtattacgt
ccagctaagaacggatgccgaaaaataattctgtcaacaaatatcgccgaaaactcgata
aatataccagaggtccgatatgtggtcgatagcgggaagaaacatgattcggtctacgac
ccgtccaccgggctgcggaaagtagttggtggctgggttgataagctggctatccatcaa
agggaagcatgcgcaagccgaaccggcaatggttcctactatgccacattcacacagtcg
agatatgacgcattgacaaggagcactcctccccggatctatgtggacgaaattgaaact
gaatctctccagctaagagccactttacccgacttacctctccgcgatttcatgcgtcag
gtgccaaatccaccttcgctagatcgtctcaacagtaccactgcaaacctgcagtcaatt
ggggcaatagataataatggcgatatcaccgcgctaggtcgtatcctatccctattacct
gtccctctaaaagctggcaaaatggtcatgctcggaattctcttgagatgctttgagcct
gccttaatacttggtgctgccacacatgctcgttcccttttcattccatctcggtccgag
agatggtataattcaccgcgccgaaagtttgctggggaaaccaacagcgaccatatagca
atcttgagagcctatcggaaaattaaccaaatatccaacaagcatggacaggaagctgcc
cggaaatattgcttgcagcagtctatgagccatgcaacatatctggacatggagttattt
atttcacggataaccctcacgcttcgtcatcttaacctcattccagctacagagagcgag
tctggggagaacgtcctcaacgaaaactctggcgatcactcggttctcagagcccttatc
actgccactgtaaccccaaatattgccatcaagcccagtgatagtggaggccaatggcac
accaaacgcttcccagcagccgtcgttagcaataaaagcaccaactcgttccagaaaagc
tgggcgggtcgaatgctagcgtttaacgaagcgttgaacttccatagtgaggctgacgca
atcatgatggacacgacgtctgttcacccgctgatggcctgcctttttggtggaaacctt
tcccgagaagataatgcgcttttccttgattcccatttagcagtcaagataaaatccccg
gatggtagtatggaaagtggctctcgggctgctagtgccgttgttaaggcaaggaaactg
atagacaaggcatccgaggatttcttcaacgacctcgccagcaacagaagctgggctgag
gcggaatctgatcgtcgacgccttgcgacagagatcaaaagcatcatagataccctgcct
gatacccgccagtcaggcccgctgatacgaaaaatcccctaa
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integrated database retrieval system
