Trichophyton verrucosum: TRV_00715
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Entry
TRV_00715 CDS
T01615
Name
(RefSeq) small nuclear ribonucleoprotein SmF, putative
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
tve
Trichophyton verrucosum
Pathway
tve03018
RNA degradation
tve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRV_00715
09123 Folding, sorting and degradation
03018 RNA degradation
TRV_00715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tve03019
]
TRV_00715
03041 Spliceosome [BR:
tve03041
]
TRV_00715
Messenger RNA biogenesis [BR:
tve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TRV_00715
mRNA degradation factors
5'-3' decay
Lsm complex
TRV_00715
Spliceosome [BR:
tve03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TRV_00715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Hfq
LSM14
DUF1106
Motif
Other DBs
NCBI-GeneID:
9580569
NCBI-ProteinID:
XP_003025057
UniProt:
D4D0W9
LinkDB
All DBs
AA seq
86 aa
AA seq
DB search
MEATSASEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKM
RRSYGDAFVRGNNGMLGLCLLERIPD
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atggaggccacttctgcttccgagggcaaagatccctctgctttcctgggagagatcacc
ggtgctccagtcaccgtcaagctgaattccggcgtcgtctacaaaggcgagctacagtcc
gttgacggctacatgaacattgcgctggagaagaccgaagaatacgtcaacggtaaaatg
agacggagctacggcgatgcattcgtacgagggaacaatggtatgcttgggctatgtctt
cttgagaggatcccagactga
DBGET
integrated database retrieval system
