Trichophyton verrucosum: TRV_01081
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Entry
TRV_01081 CDS
T01615
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tve
Trichophyton verrucosum
Pathway
tve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRV_01081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tve03021
]
TRV_01081
03019 Messenger RNA biogenesis [BR:
tve03019
]
TRV_01081
Transcription machinery [BR:
tve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TRV_01081
Messenger RNA biogenesis [BR:
tve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
TRV_01081
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_PCFS4
VHS
Motif
Other DBs
NCBI-GeneID:
9580222
NCBI-ProteinID:
XP_003024732
UniProt:
D4D1X9
LinkDB
All DBs
AA seq
597 aa
AA seq
DB search
MSGLVSDEVAEDYKNSLEDLTSNDKFQISNLTVIAKENTEHAMAISRVLENHIRNTPPSQ
KLPALYVVDSVVKNVGTPYTLFLGRNLYQTFMNAYTLVDSQTRKKLDEMLKTWKEPVPGS
LDPRPVFPAEITRNIENALIKARTAALQQQQSRSQQEAMSLGRGIGTPPPIWRNTPTPPQ
GGPRYPPGYGYNNQQMPSNGHGYPNQPLYNQPPQEPINLASLHRDVDSLIMSVRLEFTAN
PLNTAVQQKLKALLDLQNILQQQRLPDAQLKQIRDQVSQLSASSAKPTPPPPAPAALPAH
ISNPPVSTPPIGTVPAQAPQPNLQALLNPNTLAELIKATAQKPTPTQQTQPYTQPAAPTP
SLAAAVQPPVSLAESPLIASLRARGLLPPATGTPTTTPPNLPFIIPGQPPYAPVPANTNS
QGVKIKVPMTSASIRILALQNKSTDKRGSQEKSEQKLVSRRARKFYAVSLDWIKFREFED
DIGADDASVAARKSNNEDASGKKAEQQRWIHAPNDATLRNTPCPICQENFESTWFEEAQD
WIWRDAIKVGNRIYHASCYAEVTKDGSTGANADISRGRTSTPDSVLGKRKAEVSIFS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcctcgtttctgacgaagttgcggaggactataagaactccctggaagacctc
acatcgaatgacaagttccaaataagcaatttgaccgttattgcaaaggagaacactgaa
catgccatggccatctcccgagtgctggagaatcacatacgaaacacaccaccatctcaa
aagttaccagctctctatgtagtggactcagttgtgaagaatgtagggactccttacacg
ctgttcctgggccgcaacttatatcaaacattcatgaacgcctatactctcgttgactcg
cagactcgcaagaagttagacgagatgcttaagacatggaaagaacctgtccctggttct
ttggatcccaggcctgtcttcccagctgagattactcggaatatcgagaatgctctgatc
aaagctaggacagcagcccttcagcaacaacagtccagaagccagcaggaagccatgagc
ctcggtaggggtataggtacaccgccgccaatatggagaaatacccctacaccaccccag
ggtggccccagataccctcctggatacggttataataaccaacaaatgccgagcaacggc
catggatatcccaatcaaccactatataaccaaccaccacaggaaccaatcaacctagcc
tccttacatcgtgacgttgactcgttgataatgagtgtacggctcgagttcactgctaac
ccacttaacaccgcagttcagcaaaagctcaaggcccttttagatttacagaacattcta
caacagcaacggttaccggatgcacagctaaaacagatccgtgaccaggtatctcagctt
tctgcctccagcgcaaagccaacaccaccgccccctgcacctgctgctttgcctgctcat
atctcaaatccccccgtctctacacctcctatagggacagtacctgcccaggcaccgcaa
ccaaacctccaagctttactgaacccaaacactcttgcagaacttatcaaggcaaccgca
cagaagcctactccaacccagcaaactcaaccatatacccaaccggctgctcctactcca
tcacttgcagcagccgtacaaccacctgtatccctagccgaaagtcccttgatagcgtca
ttgagagctcgtggccttctacctcctgctacgggaactcctacaaccacaccgcctaat
ctccctttcatcattccaggccaaccaccttatgctccagtgcctgccaacacaaattct
caaggtgtcaagattaaagttccaatgacctctgcttcgatacgaatactggcacttcaa
aacaaatctacggataaacgaggcagccaagagaagtcagaacagaagctggtatctcga
cgagcgcgtaagttttatgcagtcagcttggactggataaaattcagagaatttgaagat
gacattggtgccgacgatgcatccgtcgctgccagaaaatccaacaacgaagatgcatca
ggtaagaaggcagaacagcaaagatggatccacgctcccaatgatgccacgcttcgcaat
actccctgcccaatatgtcaggagaactttgagtccacttggtttgaagaagcgcaagat
tggatatggagagatgctattaaagttggaaatcgcatatatcacgccagttgctatgca
gaggtcacaaaagatggcagcacaggtgcaaatgccgatatatcgcggggccgaaccagt
acgccggattctgttctcggcaaacgaaaagcagaggtgagcatattctcttga
DBGET
integrated database retrieval system
