Trichophyton verrucosum: TRV_02523
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Entry
TRV_02523 CDS
T01615
Name
(RefSeq) CAF1 family ribonuclease, putative
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tve
Trichophyton verrucosum
Pathway
tve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRV_02523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tve03019
]
TRV_02523
Enzymes [BR:
tve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
TRV_02523
Messenger RNA biogenesis [BR:
tve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
TRV_02523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
HDA2-3
Motif
Other DBs
NCBI-GeneID:
9583441
NCBI-ProteinID:
XP_003023421
UniProt:
D4D600
LinkDB
All DBs
AA seq
425 aa
AA seq
DB search
MKEEQDAMDRAHKDKDKLLRSLINLDTLAPGHAQFIRQVRHSIREWIEKPAPKDAYLNIP
KPAGMTAAHKLPLELDNYQKRLVHQIVQSEYPGYVSIGKKSFIQILPYDKMRENVFLQKK
LQRTRCNIASQKGFSWVIEALMGSELSKLDLRLLWRPDGMFTAAEGSKLTKESEALREKL
RSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQQAINELFPLVIDTKYMATTGGVLRD
ASSALSTLMENLGSRVVPKFGILFHSMHLLLLSPRKLTFCANGIETHPDHSSYTVSTPMH
EAGYDSLMTAQIFLKLAVQLYETNEQGKAENTTQQKLVYGHATKFDLLLDMDDEESGASS
VGPSEQDSLLEQKVIEGKLLPRLDDDFWSKYINKLRVFGTTEEKINFERGEASLSRIFGG
CFCAF
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggaacaggatgcaatggaccgagcgcataaagacaaggacaagttgttgaga
tccctgatcaatctcgatacattggctccgggtcatgcacaattcattcgacaagtccgg
catagtatcagggagtggatcgagaagcccgccccaaaagatgcctatctgaatatacca
aagcccgctggtatgaccgcggcccacaaactcccactggagctggacaactaccagaag
cggctcgtgcaccagatcgttcaaagtgagtacccaggctatgtgagcatagggaagaaa
tccttcattcagatactcccctatgacaagatgcgggagaatgtttttctccaaaagaag
ctccagcgcactcgttgcaacatagctagccagaagggcttcagctgggtcatcgaagct
ttgatggggagcgagctttcaaagctcgacttgagactcctctggaggcctgatggcatg
ttcaccgcagccgaaggaagtaaactcacaaaggaaagtgaggctctccgggaaaagctg
aggtcagggcctcctgttttagttggacacaatctattcaccgaccttgtcaacttttac
aaatgtttcattggcgacctgcccagtcgtgtggaggatttccagcaagcaatcaatgag
ctgttccctttggtcattgatacgaagtacatggcaactaccgggggggtattacgagac
gcatcctcagccctgtcaacactcatggaaaacctgggttcaagggtggtgcctaaattt
ggtattttgtttcactcaatgcacctgcttcttctttctcctcggaaactaacattttgt
gcaaatggtatagaaacccacccagatcactcctcgtacaccgtcagtaccccaatgcac
gaagcggggtatgacagccttatgacagcccagattttcctcaagctcgcggtgcagctc
tatgaaacaaatgagcaagggaaggcagaaaacacgacgcagcaaaagctcgtgtatggt
catgcaaccaaatttgacctcctgttggacatggatgatgaagaaagcggcgctagctct
gtgggcccttccgagcaagacagtcttcttgagcagaaagtaatcgaaggaaagctactc
ccacgacttgatgatgacttttggagcaagtacataaacaagctcagggtctttggaaca
actgaggaaaaaatcaactttgaacgtggagaagcctccctaagccgaatttttggtggt
tgcttctgtgccttttaa
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