Trichophyton verrucosum: TRV_03502
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Entry
TRV_03502 CDS
T01615
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tve
Trichophyton verrucosum
Pathway
tve03013
Nucleocytoplasmic transport
tve03015
mRNA surveillance pathway
tve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRV_03502
09122 Translation
03013 Nucleocytoplasmic transport
TRV_03502
03015 mRNA surveillance pathway
TRV_03502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tve03019
]
TRV_03502
03041 Spliceosome [BR:
tve03041
]
TRV_03502
Enzymes [BR:
tve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TRV_03502
Messenger RNA biogenesis [BR:
tve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TRV_03502
Spliceosome [BR:
tve03041
]
Complex C
Other components
EJC/TREX
TRV_03502
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TRV_03502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Ned1_M
Motif
Other DBs
NCBI-GeneID:
9580921
NCBI-ProteinID:
XP_003022375
UniProt:
D4D8R4
LinkDB
All DBs
AA seq
541 aa
AA seq
DB search
MATEEDLIDYSDEELQTTDAAAAPAAPAANGDASKKGDLTVGGAGADKKGSYVGIHSTGF
RDFYLKAELLRAITDCGFEHPSEAIHEDTLFSRRKENYLWKHISFRARDTGLWASFCGVR
PQSRIELMPLLPLLVFLGLYWRKGNVTLTRRETSKHENLVFIELFSTLKIPPRAALQISL
YVAFQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAY
QIKDEYARFSKYMPDVKTAVFYGGTPIQKDIEILSSKETHPNIIVGTPGRLNALLRDKKL
SLRNIKSFVLDECDKMLDQKDMRADVQEIFRSTPADKQVMMFSATLAQEIRPICKKFMRN
PLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTVRATELDK
LLRECNFPSIAVHSGVSQEERIKRYREFKEFNKRICVATDVFGRGIDIERINLAINYDMP
IDADSYLHRVGRAGRFGTKGLSISFVSDEENMQVLKDIEKRFEVALPEYPEEGVDASTYM
A
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgaagaagatcttatcgattactccgatgaggaactccagaccactgatgct
gccgctgcgccagctgcgccagctgccaacggtgatgcgtctaagaagggcgatctgact
gtaggcggagcgggcgccgacaagaagggcagttatgtcggtatccattcgaccggtttc
cgtgatttctacctcaaggcagaacttctacgcgcgatcaccgattgcggcttcgaacat
ccatcggaggcaatccatgaggacacattattttcaagaagaaaagaaaattatctgtgg
aaacacatttcttttcgcgcaagagatacaggcctctgggcctcattttgcggcgttcga
ccccagagtaggatcgaactaatgccacttttgccgcttctggtcttcctaggcctttac
tggcgcaaggggaacgtaacattgacccgtcgcgaaaccagcaagcatgagaaccttgta
ttcatcgagttgttctccaccctgaagatacctcctcgtgccgccctgcagataagccta
tatgttgcattccagcaagtctgcatcccaacagctatccttaatgtcgacgttctctgt
caagccaagtccggtctcggaaagacagctgtttttgccttgaccactctccaccagctt
gagccagttcctggaacttgctctatcctggtcatgtgccctactcgagagttggcttat
caaatcaaggacgaatatgctagattcagcaaatacatgccagacgtgaagactgcagtg
ttttatggaggcaccccgatccagaaggacattgaaatcctttcttccaaggagacccat
cccaacatcattgttggtactccaggccgattgaatgcccttttgcgggataagaagcta
tccctccgcaatatcaaatcatttgtcttggacgagtgtgacaaaatgctcgaccagaag
gacatgcgcgctgatgttcaagagattttccgctctactcctgctgataagcaggtgatg
atgttcagtgccactcttgcccaggagatccgtcctatttgcaagaagttcatgcgaaac
cctctcgaggtgtatgttgatgatgataccaaactcaccttgcacggtcttcaacaatat
tacatcaaactcagtgaagcagagaagaaccgcaagctcaacgagctccttgacaacctt
gagttcaaccaagtcatcatcttcgttaagagtaccgtccgtgcgacagagcttgacaag
ctcctgagggagtgtaacttcccaagtattgctgttcattccggtgtttcccaggaagag
cgtattaaacgataccgcgagttcaaagagttcaacaagcgtatttgcgtggcaactgac
gttttcggtcgtggtatcgacattgagcgaattaacttggccatcaattacgacatgcca
attgatgccgactcgtaccttcaccgagttggccgtgctggccgatttggtaccaagggc
ctgtccatctccttcgttagcgacgaagagaatatgcaggtactgaaggatattgagaag
cgcttcgaggtcgcacttccggaatatcctgaggaaggcgtcgatgccagtacctacatg
gcatag
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integrated database retrieval system
