Trichophyton verrucosum: TRV_04033 Help Entry TRV_04033         CDS       T01615                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism tve  Trichophyton verrucosum Pathway tve03013   Nucleocytoplasmic transport tve03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:tve00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     TRV_04033    03015 mRNA surveillance pathway     TRV_04033  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:tve03019]     TRV_04033 Enzymes [BR:tve01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      TRV_04033     5.6.2.5  RNA 5'-3' helicase      TRV_04033 Messenger RNA biogenesis [BR:tve03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      TRV_04033    mRNA cycle factors     Common to processing body (P body) and stress granule      TRV_04033 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_12 UPF1_Zn_bind AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD NPHP3_N Helicase_RecD UvrD-helicase AAA_22 SLFN-g3_helicase nSTAND3 AAA_16 PhoH TFIIF_alpha AAA_32 ATPase Motif Other DBs NCBI-GeneID:  9578738 NCBI-ProteinID:  XP_003021856 UniProt:  D4DA87 LinkDB All DBs AA seq 1080 aa AA seqDB search MEAFNKMGNHMVSDSAATINAGGDDISTVDGEESVLNMAGGPQKRRHDDEDEGSDTLDDD DDDDLESMASVAVDGAGKPQASKTEEEKELPAHACGARGNTSSSHIVNHLVRARHKEVQL HPASSLGDTILECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCAAMPSSKDMNWDTSRWQ PLMEDRSFLPWLVSAPSDQEQLRARHLSPQMIAKLEELWKENASATVEDLEKATNVDDEP APVLLRYDDAYQYQNVFGPLVKIEADYDRKLKEAQSQDGLTVRWDLGLNNKHLASFVLPK LELGDVKLAVGDEMRLKYAGELRPKWEGVGYVIKIPNNQSDEVTIELRSKGDHKSVPTEI SHNFTADYVWKATSFDRMQLAMKTFAVDEMSVSGYIFHRLLGNEVAAAPMKTQMPKQFSV PGLPGLNSSQINAVKAVLQKPLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNV AVDQLCECIHRTGLKTVRVTAKSREDVESPVRHLSLHEQVRNNDSNIELVKLNQLKTELG ELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVLIDESTQSAEPE CMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVILGCAPIRLNVQYRMH PCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWPVADKPMMFWSNLGNEEISASGTSYL NRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQRSYVVSSMQLTGTFKKEWYKEIEVAS VDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGNPKVLSKHPLW NYLLRHFKEQNCLVEGPLSNLQTSLIQFSRPKQAYRGPQRFQMSFNHASNVDSSMLNGRN GHHHDYHDAGSVVSYIPDDVSSVHSSALGGVAIPSGYPHMFQNFTESWPSAPNNRRPNGS RMRGAPSVAGESVAATESDVTGSVVDGRSTVGQGGVSLSGLSIHDVQKQTSLSQSDRLKR YVESSGRPEPYRGGTDTGSVFGGSAAGIRVPRQNLGHSGDDDDARSVSTAFASQVGGNYD NT seq 3243 nt NT seq  +upstreamnt  +downstreamnt atggaagcgtttaacaagatgggaaaccatatggtttctgactctgcagctacgattaat gctggcggtgacgatatctctacggtggacggtgaagaaagcgtgttgaacatggcgggc gggcctcagaaacgaagacatgacgatgaagacgaaggctccgatactctcgatgatgac gacgatgacgacctggaaagcatggccagtgtggcagttgatggtgctggcaagccccag gcaagcaaaacagaggaggaaaaggagcttcccgcacacgcttgcggtgctcgtggaaac acgtcttcatcgcatatcgtgaaccatctggtcagggctcgccacaaggaagttcagctc catcccgcatcatcacttggtgatactatattggaatgctataactgcggaaccaagaat gttttccttcttggattcattccggcaaaatctgataccgtcgtggtgctcctttgccgc caaccttgcgcagccatgccttcttcaaaggatatgaactgggatacctcacgatggcaa ccactaatggaagaccgttcatttttaccgtggcttgtctctgcaccatccgatcaagag cagcttcgagctcgtcacctcagtcctcagatgattgctaagttggaggagctctggaag gaaaacgcctcagccaccgtagaggacttggagaaagcaacgaacgtggatgatgaaccc gctccagttttactcagatacgatgacgcctaccaatatcaaaacgtatttggacctctc gtcaaaatcgaagccgactatgaccgtaagttaaaggaggctcagtctcaagatggcctc actgttcgatgggatcttggtctgaacaataagcacctcgccagctttgttctcccaaag ttggagcttggcgatgtgaagcttgctgtcggtgacgagatgcgtctcaagtatgccggg gagcttcgaccgaagtgggagggtgttggatatgttatcaaaatccccaacaaccagtcc gatgaagtcactatcgagctgcgttcaaagggagaccacaagtccgtaccgacagagata tcccataactttactgcagattatgtctggaaggccacctcctttgatcgtatgcagctt gcaatgaagaccttcgccgtggacgagatgagcgtgtcaggctacattttccatcgcctg cttggaaacgaggttgccgctgcccctatgaagactcagatgccaaagcaattcagtgtt cctggcctccccggtctcaacagcagtcaaattaacgccgtcaaggcagtgttacagaag cccctgagcttgatccagggtccgcctggaactggaaaaaccgttacatcagctaccatt atctaccatctcgcaaaggttaatgcaggccaggtactcgtctgcgcgccatcgaacgtc gctgtcgaccagctatgtgaatgcattcatagaaccggacttaaaaccgttcgtgtaact gcaaagtcgcgagaagacgttgaatcaccggttcgccacctttcgcttcacgaacaagtt cgcaacaacgacagcaatattgagcttgttaaacttaaccagctaaagactgagttgggc gaactctccagtcaagatgaaaagaaatataagcagcttacccgtgctgctgagaaggag atcttgactaatgccgacgttatatgctgcacttgcgttggtgccggcgacccacgacta gcaaagtcgaaattccgcacggttctaattgatgagtcgacccagtctgcagagccagag tgtatgatcccgcttgttctaggatgcaaacaggctgtccttgtcggtgaccaccagcag cttggacctgtcatcatgaacaagaaggccgccaaagccgggttgaaccaatccctcttt gaacgattggttattctaggatgtgcccctattcgtttgaacgttcagtaccgaatgcac ccctgtctatcccagttctcctcaaatatgttctacgaaggttctctccagaacggtgtc tcaagcgaggaccgtctgctcaagaatgtggacttcccctggccagtcgcagataaaccc atgatgttctggtcgaacttgggaaatgaggaaatatcagcctctgggacatcatacctc aaccgcactgaggctgccaacgtcgaaaaaattgtcactcgtttcttcaaggctggcgtt aaaccatctggcattggtattatcaccccatatgaaggtcagcgcagttatgtcgtcagc tctatgcagttgaccggtactttcaaaaaggagtggtacaaagaaatcgaagtcgcatca gtcgatgcattccagggccgtgaaaaggatttcattgttctttcctgcgtccgatctaac gaccaccaaggaatcggtttccttagcgaccctcgtcgtctgaacgtggcacttaccaga gctaagtatggcctggttatcttgggaaatccgaaagttctttccaagcatccgctgtgg aactatttgctacgccatttcaaggaacagaactgcctcgtagagggaccactgtctaac ctccaaacctccctcattcagtttagccggccaaagcaagcctaccgaggccctcagcgt ttccagatgtcgttcaaccatgcctccaatgttgacagcagcatgttaaatggaagaaat gggcatcatcacgattatcatgatgctggatccgtcgtgagctatatcccagatgatgta tcttccgtacattcatcggctctaggcggcgtggctattccctccggataccctcatatg ttccaaaacttcactgaatcctggccttctgcccccaataacaggcgtccaaacggctct aggatgaggggtgcaccaagcgttgcaggcgagtccgttgcagctacagagtctgatgtt actggtagtgttgtcgatggaagaagtactgtaggccaaggtggagtcagcctctccggc ctgagtatccatgatgtccagaagcaaaccagtctgagtcaatctgatcgtttgaagcgc tacgttgaatcaagcggtcgtcctgagccataccgaggcggaactgatactggaagtgtc tttggtgggagtgcagctggaatccgtgtcccacgccagaacttagggcattccggggat gatgatgatgcccgcagcgtctctaccgcgtttgcaagccaagtcggaggaaactatgac tga

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