Trichophyton verrucosum: TRV_04368
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Entry
TRV_04368 CDS
T01615
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tve
Trichophyton verrucosum
Pathway
tve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRV_04368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tve03019
]
TRV_04368
Messenger RNA biogenesis [BR:
tve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
TRV_04368
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
OB_Dis3
Rrp44_S1
PIN_4
CSD2
OB_HELZ2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
9578482
NCBI-ProteinID:
XP_003021521
UniProt:
D4DB69
LinkDB
All DBs
AA seq
1044 aa
AA seq
DB search
MKSLRRNNSSNPHASNVSSKIFVRSTKSGKVQKIVRELYLRQDIPCSSKLCTACLSYAPT
DANGFVTPFVLSERPAGTKRFPKGHYLIPDTNALLNAMDLFEQTSAFYDVIILQTVLEEL
KNQSLPLYNRLISLIRSEEKRYYLFFNEFRLETHVRRGAEESINDRNDRAVRTAAKWYTE
HLQAVTRSSQKEQSAPAIVVITDDKGNRSKADEEGVVALSLTEYISGLEDADRLLDMVNE
SKLAHDAKPKKGEMLYSAYYSMSKIMTLIRAGTLHQGIFNVSPYNYLEGSVNVPAFEKSL
LILGRDNSNRAISGDIVVVEVLPKDQWKTPSSKIIDEEALTKDDNPEAEENEAVVTERER
KALQEEVRKAHGTGTESRPQPTAKVVGIIKRNWRQYVGHIDGSSSSQASSAGRRQQTVFV
IPMDKRVPKIRIRTRQANELMGQRILITIDAWDRDSRYPVGHFVRSLGEVETKGAETEAL
LLEYDVQYRPFPQTVLDCLPPEGHDWKVPKDMSDPGWNDRKDLRDLLVCSIDPPGCQDID
DALHSRPLPNGNFEVGVHIADVSNFVRPNNAMDTEASMRGTTVYLVDKRIDMLPMLLGTD
LCSLKPHVERYAFSVLWEITPDAEVVSSSFTKSVIFSREAFSYEQAQLRIDDQSKTDDLT
ASMRTLLRLSKLLRQKRMDAGALNLASPEVRIETDSELSDPVADVKTKALLDTNSLVEEF
MLLANISVAARIYESFPQTALLRRHATPPPSNFEELITQLSKKRNLTLDVSSSLALANSL
DKCVDERNPFFNTLIRILATRCMTSAEYFCAGAHSESEFRHYGLASPIYTHFTSPIRRYA
DLVVHRQLAAAIGYEGPGASAGEGLTTRSKLEDICKNINHRHRNAQFAGRASIEYYVGQA
LKARGEMEAKRLGSDVAPGVDEEGYVMRVFDNGVVVFIPRFGIEGVVRLEDFVLDGQQAK
VFDPSASKQLAARRESEFDNEQYSLKVWEKEGDEGDEETKSPSTSKSMVVELFDKVKVNV
SSVKEEKGRGAGKRRVRVLILEKA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtctacgaagaaacaactcctcaaaccctcatgcctcgaatgtctccagcaaa
atatttgttcgttccacaaagagtggcaaggtccagaaaatagtgcgggagctctacctt
agacaagatattccatgctcctcaaaattatgcaccgcatgtctttcatatgcgccgaca
gatgccaatggctttgtcacacctttcgttctctcagagaggcctgccggtacaaagcgg
tttccaaagggccattacttgattcctgacacgaatgctctacttaatgcaatggatctt
tttgagcagacaagtgccttttatgatgttatcattttgcagaccgtgctagaagagctc
aagaaccagtctctacctttatacaaccggctaatatctctgataaggagcgaagagaaa
cgatactacctgttttttaacgaattccgactggaaacccatgtcagaagaggtgcagag
gagagtataaatgaccgcaatgaccgggctgtgagaacagctgcaaagtggtacacagaa
catctccaggcggtcacaaggagcagccagaaggaacaaagtgcccctgccatcgtagta
attacagatgacaagggaaaccgttccaaggcagatgaagagggtgtggttgccctgtcc
ttgacagaatatatatccgggcttgaagatgcagacagactactggacatggtcaatgag
tcaaaattggctcatgatgctaagccaaagaagggagagatgttatattctgcctattat
tctatgtcaaagataatgacactgataagagctggtactttgcaccaggggatattcaat
gtctctccttataactatctagagggtagcgtgaatgtccctgcttttgagaaatcactc
ctcattctaggaagagataacagcaacagggcgatttctggagatatcgttgttgttgag
gtactgcccaaggatcagtggaaaacaccctcctctaaaatcattgatgaggaagcttta
acaaaagatgataatcccgaagctgaagaaaacgaggctgtagtgacagagcgtgagagg
aaagctctacaggaggaggtccggaaagctcatgggacaggaactgaaagccgcccgcag
ccaaccgcaaaggtggtcggtatcatcaagagaaactggcgacaatacgttgggcacatt
gatgggtcatctagctcgcaagcttcgtcggccggtcgacgccaacagactgtcttcgtg
attcccatggacaaacgagtgcctaagataagaataagaactcgacaagcaaacgagctt
atggggcagagaatactgatcacaatagatgcctgggatagggattctcgatatcccgtg
ggtcacttcgtgcgatccctgggagaggtagaaaccaagggcgctgagacagaggcactt
ttgttggagtatgacgtgcaatacagaccgtttcctcagacagttctggattgtctaccg
ccggagggccatgattggaaggttccgaaggacatgtcagaccctggatggaatgacagg
aaagacttgagggatttacttgtttgcagtattgacccgcccggttgtcaggatattgat
gatgcacttcactcccggccgttaccaaatggtaactttgaagtcggtgttcatatcgca
gacgtctccaactttgtgcgtccaaataatgccatggatacagaggctagcatgcgagga
acaacggtctatctggtagacaagcgaatagacatgcttccaatgctacttggaaccgat
ctctgctctcttaagccccacgttgaacgttacgcattttccgtgttgtgggaaataact
cccgacgcagaggttgtgtcttcgagttttaccaagtccgttatcttttcccgcgaggca
ttcagttatgaacaggctcaattgcgtattgatgatcagtcgaaaacagacgacctaaca
gcaagtatgcgtaccctcctccggctgtctaagctgcttcgacagaagagaatggacgcg
ggagcactaaaccttgcctccccagaggtccgcattgaaacagactcggaactctctgac
cctgttgcagatgtcaagacaaaggctcttttagatacaaacagcctcgttgaagagttc
atgcttctcgccaatatctcggtagccgccaggatctatgaatcgttccctcagacggcc
cttctgcgaagacatgctacaccaccgccttcaaatttcgaggagctaataacccagctt
tcgaaaaagcgcaatctgacactcgatgtgtctagctcactagctctagctaattcccta
gacaaatgcgttgacgagagaaatccttttttcaacactctcattcgtatcttagctaca
cgatgcatgacttccgcagaatatttctgcgccggggcacattcagaatccgaattcaga
cattatggacttgcttcgccaatatatacccattttacgtcgcctattcgacgatatgct
gatcttgttgttcatcgacagctggctgccgccatcggctatgagggaccaggagcttct
gctggtgaaggactgactactcgaagcaagctagaagatatttgcaagaatatcaaccat
aggcatagaaatgcccagtttgccggccgagccagtatagaatattatgttggccaagcg
ctgaaggccaggggtgagatggaagccaagcgtctcggctctgacgtcgctccaggtgta
gatgaagaaggctacgtgatgcgtgtgtttgataacggcgttgttgtcttcattccacgg
tttggcatcgaaggagttgtccgactagaagacttcgttttggatgggcagcaagcaaag
gtctttgatccgagtgcaagcaagcagctagctgccaggagagaaagcgagttcgacaat
gagcaatactcccttaaggtttgggagaaagaaggggatgagggagatgaagagaccaag
tcgccgtcaacatcgaagagtatggttgttgaattatttgataaagtcaaggttaatgtt
agttccgtcaaggaagaaaagggacgtggagcaggcaaaaggagagtgcgagtcctgatt
ctagagaaggcatga
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integrated database retrieval system
