Trichophyton verrucosum: TRV_05959
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Entry
TRV_05959 CDS
T01615
Name
(RefSeq) hypothetical protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tve
Trichophyton verrucosum
Pathway
tve03008
Ribosome biogenesis in eukaryotes
tve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tve00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
TRV_05959
09123 Folding, sorting and degradation
03018 RNA degradation
TRV_05959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tve03019
]
TRV_05959
03009 Ribosome biogenesis [BR:
tve03009
]
TRV_05959
03016 Transfer RNA biogenesis [BR:
tve03016
]
TRV_05959
03036 Chromosome and associated proteins [BR:
tve03036
]
TRV_05959
Messenger RNA biogenesis [BR:
tve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
TRV_05959
mRNA degradation factors
5'-3' decay
5' exonucleases
TRV_05959
Ribosome biogenesis [BR:
tve03009
]
Eukaryotic type
Pre-60S particles
RNases
TRV_05959
Transfer RNA biogenesis [BR:
tve03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
TRV_05959
Chromosome and associated proteins [BR:
tve03036
]
Eukaryotic type
Gene silencing
piRNA pathway
TRV_05959
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
RXLR
DUF5677
Motif
Other DBs
NCBI-GeneID:
9584744
NCBI-ProteinID:
XP_003019990
UniProt:
D4DFK8
LinkDB
All DBs
AA seq
1303 aa
AA seq
DB search
MGVPKFFRWLSERYPAISQLIAENRIPEFDCLYLDMNGIIHNCTHKDSDSPTFRMTEDKM
FIAIFNYIEHLFGKIKPKRLFFMAIDGVAPRAKMNQQRARRFRTALDAELAKEKAIKEGV
EMPKEDAFDSNCITPGTEFMAKLTKQLKYFINKKVSEDAEWQGVEVVLSGHEVPGEGEHK
IMEYIRQAKAQPEYDPNMRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQSQKKSKE
LEHQNFYLLHLCIVREYLELEFQELKLDGALQFPFDMERIIDDFILMAFFVGNDFLPNLP
NLHINEGALAWMFKVYKDVLPKLGGYVNEHGTINMERLRTLLAALSDVEFRFFEAEYSDA
RWLKSKTLDGDQTPTLPEKPNVLTITPAQKHIFNRIKKYVTHRPMDEAGQPVPLDLSPSL
PARDRKFVEQLADSLHLKWSSVLNQHEERFLRVQLPTNDDDDDEDDDDDESQIAILRVLK
KYENAKVKEVTAEDAQMAAEKKYEKKFQDWKDKYYKGKFGWGLENTEEMRKLTENYVQGL
QWVLFYYYRGVASWPWFYRYHYAPMISDIHLGLGADVDFKLGQPFFPFQQLMGVLPDRSK
KIVPVAFHSLMTSPDSPIIDFYPRDFELDMNGKKMEWEAVVKIPFIEEERLLKAMATKEH
LLTPDEKARNTFGVTLKFTYSPDVEFLYPSSLPGIFPDVSRCRCIENVFELPTMEGLDPY
VGLVEGVKIGAEALYGFPSLQTLQQTGQLGFHGVCVFQQESRNESMVVTISDPEIGGNTA
DAKTKLGKRVHVGYPFLQEAKVVCVSDELFDYVQVDGEEHVVPIPHTPTQISQWKKKAEK
IESYYSKRLGMVIGDVETIVRVEMLKGLKKTPDGATVKEFTEIPGVETEYAAQLIVDSVM
SEDLRFIEREAVPIEEEFPEGARAFFLGEYNYGAPVHVTGHEDGKLSGLLSAVKGKEPEF
GREHVLNAEKLSKYTPSFAIARNLRLSPLTLAKITSSFSVNMDGTRVNLGLNLKFEAKKL
KVLGYSRRGNSGWEFSERAIGLLQDYMIKFPDFIAGIQRKPQGDLFEPSDFYPADIAKEK
IKEIQAWLKSIESKSFERVPLEAEQLDSSIVQAIEKSADELSQSRPTPVAQKIRGVPRNA
LLKPADAEHRLNNQHFQLGDRVLYAQDSGKVPIASRGTVVGLTRTSRNLLLDVLFDVSFM
SGTTLSDRCSPFRGSTVPSSSVLNLTSKQLIALSRATAQNKEQAREQQLPLRAAAPQAMS
GMGQLKDEPTPPPLVNSYRGAATGQPSNGVTARRAAAVEEEAT
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccaaaattcttcagatggctctcggagcgataccctgcgatatcacaactt
atcgcggagaatcggattccagagtttgactgcctctacctcgatatgaacggaatcatc
cataattgcactcacaaggactcggactcgccgacatttcgaatgacagaagataagatg
tttatcgccattttcaactatattgaacatctctttgggaagatcaagccaaaacgacta
ttcttcatggcaatcgacggtgtggccccccgtgccaaaatgaaccagcagcgtgctcga
cgattccgtaccgcccttgatgccgaacttgcgaaggagaaggccataaaagaaggtgta
gagatgccaaaggaagatgcattcgacagtaactgcatcactccaggaaccgagttcatg
gccaaacttacgaaacaattgaagtattttatcaacaagaaagtgtcggaagatgctgag
tggcaaggtgtcgaggtggttctctccggccatgaagtccctggagaaggagagcacaaa
atcatggaatacattcgccaggcaaaggctcaaccggagtatgacccaaatatgcgtcac
tgcttgtacggtctagatgcagacttaatcatgctgggacttttgagtcatgaccctcac
ttctgtctgctccgagaagaagtgacatttggacgacagagtcaaaagaaatctaaggaa
cttgaacaccagaatttttatttgcttcacctttgcattgttcgggaatatctggagctg
gaattccaggagttgaaattagatggggcgctgcagtttccctttgatatggaacggatt
atagatgatttcatcctaatggccttcttcgttggaaacgatttcttacccaaccttcca
aacctacatataaatgaaggcgctttggcgtggatgttcaaggtttataaagatgtttta
ccgaaactgggtggttatgtcaatgaacatggaacaatcaacatggagaggctgaggaca
ctgttggcagctttgtcagatgtcgagtttcgattttttgaagctgaatattctgatgcc
agatggctcaaatcaaaaaccctagatggcgaccaaaccccaacgttgccagaaaagccc
aacgtgcttacaataacccctgcacaaaaacatatcttcaatcggataaagaagtatgtc
acccatcgcccaatggatgaggccggacagccggtgcctctcgatttatctccttcctta
ccagcgagagatcgaaagttcgtggaacagctagcagatagcctgcacctgaaatggagc
tctgttttgaatcaacatgaagaacggttcttgcgtgtccagttacccacaaatgatgac
gacgatgatgaagatgatgacgatgatgaatcacagattgcgattttgcgtgtcttgaag
aaatatgaaaatgcaaaagtcaaagaggtcacagctgaagacgcccagatggctgccgag
aaaaagtatgagaagaaattccaagattggaaggataaatactataaggggaaatttggt
tggggtttggagaatacagaggaaatgcgaaagttgacagagaattacgtccagggcttg
cagtgggtcctcttctattattatcgcggtgttgcatcgtggccatggttctaccgttac
cattatgctcctatgatctcagatatccatctcggcctaggagccgatgtggacttcaaa
cttggacaacccttcttcccatttcagcaattgatgggtgtcttaccagaccgaagtaag
aagatcgttcccgtagcattccacagtttgatgacgagtcccgactcccctatcatcgac
ttctatcccagggactttgaacttgatatgaacggaaaaaagatggaatgggaagcagtg
gtgaaaatcccattcatagaagaggagcggcttctaaaggccatggcaacaaaggaacat
ttgttgacccccgatgagaaagcgagaaacacttttggtgtgacgcttaagtttacatat
tcgcctgatgttgagtttctctatcccagttcccttcccggtatcttcccagacgtttct
cggtgtcgctgcatcgaaaacgtctttgagttgcctaccatggaagggctggacccatat
gtgggcttggtagaaggcgtgaaaatcggagcggaggctttatatggattcccaagcttg
cagaccctccaacagacagggcagcttggattccacggagtatgcgtattccaacaggag
agtcgtaacgaaagcatggtcgttactatttccgatcctgaaatcggaggtaatactgcg
gatgcgaaaaccaaattagggaagagagtacatgttggatatccgttcctacaggaagca
aaagtggtgtgtgtttcggatgaactgttcgattacgttcaagttgatggtgaagaacat
gttgtgcccatcccacacactccaacacaaatcagtcaatggaagaagaaggcagaaaag
attgagtcttattacagcaaacgccttggaatggtcatcggtgatgttgaaacgatcgtg
cgtgtggagatgctcaagggtctgaagaagaccccagatggtgccacggtgaaggaattt
acagagatcccaggagtcgaaacggaatacgctgcccagcttatagtcgattcagttatg
agtgaggatctccgtttcattgaacgagaagcagttcctattgaggaagagttcccagag
ggcgcaagggcattcttcttgggtgagtataactatggtgctccagtgcacgttactgga
catgaggatgggaaattgtccggtcttctttcggcagttaaggggaaagagccggagttc
ggaagggaacatgtcttgaacgctgaaaagctatcaaagtatactccttcgttcgctatt
gcgcggaacttgcggctcagccctcttacacttgctaaaatcacctcgtctttctcggtt
aatatggacggaacacgagtcaaccttggactcaacctcaaattcgaagcgaagaagctg
aaagtgcttggctactcgcgacgaggaaactccggatgggagttcagtgaaagagccatt
ggtctcctacaggattacatgatcaaatttccagacttcattgctggtatccaacggaaa
ccccagggcgacctgtttgagcctagtgatttctaccctgccgatattgcaaaggaaaag
atcaaggagatccaggcgtggcttaaatcaatcgagtcaaagagctttgagcgcgtccca
ctcgaggctgaacaacttgattctagcattgtacaggcgattgaaaagtctgctgatgaa
ctgtcacaaagtcggcctaccccagtggcgcaaaagattcgaggagtgccacgcaatgca
ctgttaaaacctgcagacgcagaacaccgtctcaacaaccaacatttccagcttggtgac
agagtgctctatgcacaagattccggaaaggttccaattgcttcacgaggcaccgttgtc
ggtctgacacggacatcgaggaacttgcttcttgacgtgctgtttgacgtctcctttatg
agtggcaccactctatcagacagatgttcgccgttccgcggctcaaccgtcccttcatca
tcagttctcaatctcacgagtaaacaactgattgcgctatctcgtgctactgcgcagaac
aaggaacaggcccgagaacagcaattacctctcagggctgctgctccccaagcgatgagt
ggcatggggcagctgaaagatgagccaactccaccaccgcttgtgaacagctatcggggt
gctgccaccggccaaccctccaacggggtaacggcccgccgagccgcggcggtggaagag
gaggctacgtaa
DBGET
integrated database retrieval system
