KEGG   Trichophyton verrucosum: TRV_06076
Entry
TRV_06076         CDS       T01615                                 
Name
(RefSeq) hypothetical protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
tve  Trichophyton verrucosum
Pathway
tve03022  Basal transcription factors
tve03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    TRV_06076
  09124 Replication and repair
   03420 Nucleotide excision repair
    TRV_06076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tve03021]
    TRV_06076
   03400 DNA repair and recombination proteins [BR:tve03400]
    TRV_06076
Transcription machinery [BR:tve03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     TRV_06076
DNA repair and recombination proteins [BR:tve03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     TRV_06076
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 9584629
NCBI-ProteinID: XP_003019878
UniProt: D4DFX3
LinkDB
AA seq 517 aa
MQEEYAGPTGRLRRPSSACPSSSFFASSRCPRRFLSLSSSFLRPLLEKEKPTDDRRRRRG
RSARLPTREKREKRERPGEEESESGWRIQALQRTVSPPPYRRSYTLTDLISPDPSLLTVI
LDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVASHSHQAVWLYPTPPAA
APGDAATDSQKKHLRPSNNDRDGDTPMTDYGEPVVSPQAQQLEQQPNKYRPFLLVEQQLT
RNLNRLLTRTRAEEISPSSASSSSSSTMMAGALSLALSYINRETIAYLDTHGTAAGSDPA
AGGAGGLPPPPGGAPPTSDKANAAAATDAGALQSRILIISVSSAANSAQQYIPIMNSIFA
CQRLHIPIDICKLAGDAVFLQQACDATRGIYMSLDSPRGFLQYLMLAFLPDQRARRNLIL
PTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPPEGANCLTCGTHLALGDYGAKPIVV
SRKKKRKKASAKTLNGAGNGVSSGPATPSSMATTPAP
NT seq 1554 nt   +upstreamnt  +downstreamnt
atgcaggaggaatacgcaggaccaaccggaagacttcgacggccttcttcagcctgtccc
tcgtcgtccttctttgcttcttctcgctgtcctcggcgttttctatccctttcctcgtct
tttcttcgtcctttgcttgagaaagaaaaaccgacagacgacagacggcgacggcgaggt
cgaagcgcaagattgccgacgagagagaagagagagaagcgagagagacccggagaggag
gagagtgagtcaggatggcggattcaggcgctgcagcgaacggtcagtccaccaccttat
cgtcgcagctacacactgactgacctcatatccccagatccttcgctgctgacggtcatc
ctggatacaaacccgcatgcttgggcacagcttcaagagacgctcccgctctcctctgcc
gtggcgaacctgctggtcttcatcaacgcccatctggcatgcaactacgcaaacaaagtg
gccgttgtggccagtcacagccatcaggccgtctggctgtacccaactcccccggccgcc
gctcctggtgatgccgctaccgactcgcaaaagaaacacctccggccgtccaataacgat
cgggacggagatacacccatgaccgactacggagaacccgtcgtctccccgcaagcacag
cagctggaacagcagccgaacaagtaccgtcctttcctcctggttgagcagcagttgacc
cgcaacctcaatcggcttctcacgcgcacccgagcagaagaaatatccccttcttctgct
tcttcctcctcctcttctaccatgatggccggcgccctctcccttgcactcagctatatc
aaccgcgaaaccatcgcttaccttgatacacatggaacggcggccggctccgacccagcg
gcaggcggagcgggcggcctccccccacctccgggcggcgcccctcccacatcagataag
gctaatgctgccgctgctacagatgctggtgctctccagtctcgtatccttatcatctcc
gtcagtagtgctgcaaactcagctcagcaatacatacctattatgaacagcatctttgcc
tgtcagcgtctccacatacccatcgacatatgcaagctagccggtgatgctgttttccta
caacaggcctgtgacgctactcgtggcatatacatgtctttagactccccgcgggggttt
ttacaatatctcatgctcgcctttttacctgatcagcgagcgaggcggaacctgatactg
cctacccgtgtcgacgttgatttccgcgctgcttgcttctgtcaccggaaagtcgtcgat
gtcgggtttgtgtgtagtatctgtctcagtatcttctgcgaaccacctgagggtgccaat
tgtctcacctgtggcacccatttagctctgggtgactatggagccaaaccgatcgttgtt
tcacggaagaagaagcgtaagaaagcttccgcaaagacacttaatggagcaggtaacgga
gtctcttccggtccagccaccccgagttcaatggcaactaccccggctccctga

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