Thiocystis violascens: Thivi_0681
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Entry
Thivi_0681 CDS
T02138
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tvi
Thiocystis violascens
Pathway
tvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thivi_0681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvi03019
]
Thivi_0681
Enzymes [BR:
tvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thivi_0681
Messenger RNA biogenesis [BR:
tvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thivi_0681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
UTP25_NTPase-like
Exotox-A_cataly
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AFL72735
UniProt:
I3Y6W7
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All DBs
Position
731959..733278
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AA seq
439 aa
AA seq
DB search
MSFDSLGLRADLLRAVASQRYGRPTPIQAQAIPVILAGHDLLAGAQTGTGKTAAFVLPLL
QLLAEKGHPQRQPRALILTPTRELAAQIGERVHAYGIHLSLRSTVIFGGVGMQPQVNQLH
RGVDILVATPGRLLDHAGQRTLDLSRIEILVLDEADRMLDMGFIHDVKRIINLLPERRQN
LLFSATYSDDMRRFSENLLTRPKLIEVARRNTAAETVVQAAHPVDKSRKRDLLAHLFHRE
GWSQVLVFTRTKAGANRLAEHLGREGIAATAIHGNKSQSARTRALDEFKRGAVRALVATD
IAARGLDIAHLPQVVNFELPNVAEDYVHRIGRTGRAGAGGQALSLVSHDEMGLLKGIQRL
LGRQITLNPVVGFEPSLTPPPCDPEPGPGARRGAADANGAARRQNRPVVRAHANPRAGQG
PKPGRRARPHAASQAKPSR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgattcactcggtcttcgggccgatttactgcgcgctgtcgcgtcgcagcgt
tatggccgtcccacgccaattcaggcgcaagcaattcccgtgattctggcgggccatgat
ttgctcgccggcgctcaaaccggcaccggaaagaccgccgcattcgttttgccgcttttg
caattgctcgccgaaaaaggacatccgcagcgccagccgcgcgcgttgatcctgacgccg
acccgtgagcttgccgctcaaattggcgaacgcgtgcatgcctacggaattcacttgtcc
ctgcgctcaaccgttattttcggcggagttggaatgcagccgcaagtcaatcaattgcat
cgtggcgtcgatatcttagtggcaacgcccggccgcttgctcgatcatgccggtcagcgc
acgctggatttatcccgtatcgaaatcctggtgctcgatgaagccgaccgcatgctcgat
atgggcttcattcatgatgtcaagcgcatcatcaatctgcttccggaacggcgtcaaaac
ctgctcttttccgcgacctattccgacgacatgcggcgtttttcagagaacctgctcacg
cgtcccaaattaatcgaagtcgcccgccgcaatacggccgccgagactgtggttcaggcc
gcgcacccggtcgataagtcgcgtaaacgcgatctgctggcgcatctctttcatcgcgaa
ggctggagccaggtgctggtgtttacccgcaccaaggccggcgcgaatcggctcgcggag
catctggggcgggaagggattgccgcgaccgccattcacggcaataaaagccaatccgcg
cgaacccgcgcgctggatgagttcaagcgcggcgccgtgcgcgcactggtggcgaccgat
attgccgcgcgcggactggatatcgcgcatctgcctcaggtcgtgaatttcgagctgccc
aacgtcgccgaggactatgtgcatcggatcggccgcacgggtcgggcgggcgctggcggc
caggcgctctcgctggtgagccatgacgagatgggtttgctcaaaggcatccagcgcctg
ctggggcgtcaaattacgttgaatccagtcgtgggcttcgagccatccttaacgccgcca
ccctgcgatccagagccggggccgggtgcgcgtcgtggcgccgccgatgccaatggcgcg
gcgcgtcgacagaatcggccggtggtacgagcgcacgcgaatccgcgggcagggcaggga
ccgaagccgggacgtcgtgctcgcccccatgcggcttcccaggccaagccctcgcgctag
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