Thiocystis violascens: Thivi_0897
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Entry
Thivi_0897 CDS
T02138
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tvi
Thiocystis violascens
Brite
KEGG Orthology (KO) [BR:
tvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tvi03016
]
Thivi_0897
Enzymes [BR:
tvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Thivi_0897
Transfer RNA biogenesis [BR:
tvi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Thivi_0897
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
AFL72935
UniProt:
I3Y7G7
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All DBs
Position
complement(971624..973486)
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AA seq
620 aa
AA seq
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MLIRFLEQVKRALSIYQANPPIDSLVLYKIRPARVVSIGEKIEIELDGGHSKRVRAKDVE
LLHPGPLRSLSELAPQQGELTEAWELLEGSETTLKDLAELAFNAFTPATAWAAWQLVAEG
LTFTGRPQAIQARTRELVEREQAERAARDAAERDWKAFLERMAAACPAPEDTHRLGEVER
LALGQSEHSRILEALGHQQTPGNAHRTLVQVGYWERNHNPYPVRCGAPTQDPDLPVPELP
EEDRIDLTHLSAYAIDDEGNQDPDDALSLDGERLWVHVADVAALIDPDSDLEREARARGA
NLYLPERIVNMLPSAVTDRLGLGLQPVSPALSFGFRCGDAGEIEAIEVCRSWVRVERLSY
DVVETQLDTAPFAALRTIANRFRDRRSAQGATSLELPEVSVRVVDGQVVIRPLPRLKSRA
MVMDAMLMAGEAAARFCLDQGIPIPFATQPPPENGDEATDLAAMYARRRCFKPTRLSVEP
ESHAGLGLPLYTRATSPLRRYSDLLVHQQIRAWLGGREPRSAQRIMECSGEADTASIAIR
RGERLSNQHWKLLFLRDNPNWKGEGIVVGREDRKVILLLPELAMEARVRVRDEVELNQRL
RLAVGEIDVAELTASFRILG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgttgattaggtttttggaacaggttaaacgcgccttgtcgatttatcaggccaatcca
cccatagacagtctcgtgctctacaagatccgcccggcgcgggtcgtgagcatcggcgag
aagatcgagatcgaactcgatggcgggcacagtaagcgggtgcgcgccaaggatgtcgaa
ctgctccatcccggccccttgcgcagtctgtccgagctggcgccgcagcagggcgagttg
accgaggcatgggaactcctggaagggagcgaaaccaccctgaaggatctggccgaactg
gccttcaacgcctttacgcccgccaccgcctgggccgcctggcaactcgtggccgagggc
ttgacctttaccggcaggccgcaagcgatccaggcccgcacccgcgaactggtcgaacgc
gagcaggccgagcgcgccgcgagggacgcagccgagcgcgactggaaagcctttctggag
cgtatggcggcggcctgtccggcaccggaagacacccatcgtctgggtgaggtcgaacga
ctggcgctcggtcagtcggagcatagccgtatcctcgaagcgctcggccatcaacagacg
ccgggcaatgcgcatcgaacgctggtgcaggtcggctactgggagcgcaaccacaatccc
tatccggtgcgctgtggcgcgcccacccaggatccggatctcccggtcccagagttgcca
gaagaggatcggatcgatctcacccatctgtccgcctatgccatcgacgacgaaggcaac
caggatccggacgatgcgctgagtctcgatggcgagcggctctgggtgcatgtcgccgac
gtggccgcgctgatcgatccggacagcgatctggaacgcgaggcgcgcgcgcgcggggcg
aatctttatcttcccgagcggatcgtcaacatgctcccgagcgccgtgaccgaccggctg
gggcttggtctccagccggtctcgccagcgctgtccttcggtttccgctgcggggatgcc
ggtgaaatcgaggcgatcgaggtatgtcggagttgggtgcgggtcgagcggttgagctat
gacgtggtcgagacgcaactggatacggcgccattcgccgcgctccgcacgatcgccaac
cgttttcgggatcgccgctcggcgcagggcgcgaccagtctggagctaccggaggtcagt
gtgcgtgtcgtcgacgggcaggtggtcatccgtccgctgccaagactcaaaagccgcgct
atggtcatggatgcgatgctgatggccggcgaggctgcggcgcgtttttgtctcgatcag
ggtatcccgatcccgttcgcgacccagcccccgcctgagaatggcgatgaggcgaccgat
ctcgcggcgatgtacgcgcggcgacgctgtttcaaaccgacccgtctatcggtcgaaccg
gagtcccatgccggtctcggtctgccactctatacccgcgccacgagtccgctgcggcgc
tactcggatttgctggtgcatcagcagattcgtgcctggctaggcggccgcgagccgcga
tcggcgcaacggatcatggaatgcagcggcgaggcagacaccgcatccatcgccattcgg
cgtggcgaacgtctctcgaatcagcactggaagctgctgtttttaagggataatccaaat
tggaaaggggaggggatcgtggttggtcgcgaggatcgcaaagtgattttgctgctgccc
gagttggccatggaggcgcgcgtcagggttcgcgacgaggtggaactgaatcaacgtctg
cggcttgcggtgggtgagatcgacgtcgcggaactcacagcgagctttcggattctcggt
taa
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