Thiocystis violascens: Thivi_2472
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Entry
Thivi_2472 CDS
T02138
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
tvi
Thiocystis violascens
Pathway
tvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thivi_2472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvi03400
]
Thivi_2472
DNA repair and recombination proteins [BR:
tvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thivi_2472
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Thivi_2472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
DnaJ_CXXCXGXG
RsgA_GTPase
nSTAND1
AAA_22
AAA_23
NACHT
Viral_helicase1
AAA_21
cobW
Motif
Other DBs
NCBI-ProteinID:
AFL74412
UniProt:
I3YBP4
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All DBs
Position
2714437..2717286
Genome browser
AA seq
949 aa
AA seq
DB search
MHTIRIRGARTHNLKSVDLDLPRDRLIVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSSY
ARQFLSVMEKPDLDHIEGLSPAISIEQKTTSHNPRSTVGTITEIHDYLRLLFARVGQPRC
PSHDEPLEAQTVSQMVDQVLNLPEGDKLMLLAPVVSARKGEYQRLLSELHAQGFVRARID
GALCELDAPPELDLKKKHDIEVVIDRFRVRADLALRLAESFETTLNLSGGLARIGWIDEP
ERPELTFSAKFACPVCGHSIPELEPRIFSFNNPAGACPTCDGLGVEQFFDPAKVVVHPEL
SLAGGAVRGWDRRNAFYFQMLRALGEHYGFDAETPWLELSEQVRSVILYGSGKEKLKLKL
PHEKGSAKAQPFEGIVRNMERRYRETESNTVREELARYLSHQPCPACQGSRLNESARHVF
LGDSFGSARDRHNLPAVSRMPVGESLRFFETLELPGQRGEIGAKVIKEVATRLRFLVDVG
LNYLTLERSAETLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNARLLKTLTHL
RDLGNTVIVVEHDEEAIRAADLVVDIGPGAGVHGGEIVAQGTAGEIAAEPRSLTGRYLSG
ELRIAIPTQRTPNDPARQLRILGASGNNLRGVDVSIPVGTFCCITGVSGSGKSTLINDTL
HPFAARHLNGSSLQPAPHLAIEGMEQFDKVVDIDQSPIGRTPRSNPATYTGLFNLVRDLF
AAVPEARSRGYGPGRFSFNVKGGRCEACKGDGLIRVEMHFLPDIYVQCDTCRGRRYNRET
LEIRYKGKTIDEVLNLTVEDALAFFAPVPVIHRKLQTLMDVGLSYVRLGQSATTLSGGEA
QRVKLSRELSKRDTGRTLYILDEPTTGLHFHDVKHLLDVLHRFRDQGNTVVVIEHNLDVI
KTADWIIDLGPEGGDQGGEIVAVGTPEQIATTERSHTGRFLGPLLERGW
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccatccgcattcgcggcgctcgcacgcacaatctgaagagcgtcgacctcgac
ctgccgcgcgatcggctgatcgtcttcaccggcctgtccggttcgggcaaatcctcgctc
gccttcgataccatctatgccgagggtcagcggcgctatgtggaatcgctctcgtcctat
gcccggcagtttctgtcggtcatggaaaagccggacttggaccatatcgagggactgtcg
ccggcgatttccatcgagcagaaaaccacctcgcacaacccgcgctcgacggtcggcacc
atcaccgagatccatgactatctgcgcttgctgttcgcccgcgtcggccagccccgttgc
ccgtcccacgacgaacctctggaggcccagaccgtcagccagatggtcgatcaggtgctg
aatctccccgagggcgacaagctgatgctgctcgccccggtggtctcggcgcgcaagggc
gagtatcagcgactgctttccgagttgcatgcacagggcttcgtgcgcgcccgcatcgat
ggcgcgctctgcgaactggacgccccgcccgagctggatctcaagaagaagcacgacatc
gaggtcgtgatcgaccgcttccgggtccgcgccgatctggcgttgcgtctggccgaatcc
ttcgagaccacgctcaatctctccggcggactcgcccggatcggctggatcgacgaaccg
gagcgccccgagctgaccttttcggccaagttcgcctgcccggtctgcggccatagcatc
ccggagctggagccgcgcatcttttccttcaacaatccggccggcgcctgtcccacctgc
gacgggctgggtgtcgaacagtttttcgacccggccaaggtggtcgtgcatcctgaactc
agtctcgccggcggcgccgtgcgcggctgggatcggcgcaacgccttttatttccagatg
cttcgcgcgctgggcgagcattacggattcgacgccgagacgccctggctggaactcagc
gagcaggtccgctcggtcatcctctacggcagcggcaaggagaagctcaagctcaaactg
ccgcacgaaaaaggcagcgccaaggcgcagcccttcgagggcatcgtccgcaacatggag
cgccgctaccgcgagaccgaatccaacacggtgcgcgaggaactggcgcgctatctctcg
caccagccctgccccgcctgtcagggctcgcggctgaacgaatccgctcgtcatgtcttc
ctcggcgactccttcggctccgctcgggatcggcacaacctgcccgccgtgtcgcggatg
ccggtcggcgagtcgctgcgcttcttcgagaccctggaactccccggccagcgcggcgag
atcggcgccaaggtcatcaaggaggtcgccacccggttgcggtttctggtcgatgtcggg
ctcaactatctgaccctggagcgcagcgccgagaccctgtccggcggcgaggcccagcgt
atccggctcgccagccagatcggcgccgggctggtcggggtcatgtatatcctcgacgag
ccgtccatcggactacatcagcgcgacaatgcccgattgctcaagaccctgacccatctg
cgcgacctcggcaacaccgtgatcgtggtcgagcacgacgaggaggcgatccgcgccgcc
gatctggtggtggacatcggccccggcgccggcgtgcatggcggcgaaatcgtcgcccag
ggaaccgccggggagatcgccgccgaaccccgctcgctgaccgggcgctatctgtcgggc
gagctgcgcatcgccatcccgacccagcgcacgcccaacgatcccgcgcgccagttgcgc
atcctgggcgccagcggcaacaacctgcgcggggtcgacgtgtccatcccggtcggcacc
ttctgctgcatcaccggcgtctccggctccggcaaatcgaccctgatcaacgacacgctc
caccccttcgccgcccgtcatctcaatgggtccagtctccagcccgcgccgcatctcgcc
atcgagggcatggaacagttcgacaaggtggtcgacatcgatcagagccccatcggtcgc
accccgcgctccaatccggcgacctacacggggctattcaacctggtgcgcgatctgttc
gcggcggtccccgaggcgcgttcgcgcggttacgggccggggcggttcagcttcaacgtc
aagggcggacgctgcgaggcgtgcaagggggacgggctcatccgggtcgagatgcatttt
ctgcccgacatctatgtccagtgcgacacctgccggggtcggcgctacaaccgcgagact
ctggaaatccgctacaagggcaaaaccatcgacgaagtgctcaacctcaccgtcgaggac
gcgctggcgttcttcgcccccgtcccggtcatccaccgcaagctccagaccttgatggat
gtcggtctgtcctatgtgcggctcggtcagagcgccaccacgctctccggcggcgaggcg
cagcgggtcaaactcagccgcgaactgagcaaacgcgacaccgggcgcacgctctatatc
ctggacgagccgaccaccggactgcatttccacgatgtcaagcatctgctcgacgtgctg
caccgcttccgcgatcagggcaataccgtggtcgtgatcgagcacaacctggatgtcatc
aagacggcggattggatcatcgatctggggccggaaggcggcgaccagggcggcgagatc
gtcgccgtcggtacacccgaacagatcgccaccactgaacgttcgcatactggacggttt
ctggggccgttgttggaacggggatggtga
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