Thiocystis violascens: Thivi_3676
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Entry
Thivi_3676 CDS
T02138
Name
(GenBank) formamidopyrimidine-DNA glycosylase Fpg
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tvi
Thiocystis violascens
Pathway
tvi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Thivi_3676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvi03400
]
Thivi_3676
Enzymes [BR:
tvi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Thivi_3676
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Thivi_3676
DNA repair and recombination proteins [BR:
tvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Thivi_3676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AFL75526
UniProt:
I3YEV8
LinkDB
All DBs
Position
complement(4005451..4006278)
Genome browser
AA seq
275 aa
AA seq
DB search
MPELPEVETTLRGIRPHLEGRRIARLLVRDPRLRLPIPPETPELVAGQIIGALARRSKYL
LIGLERGALIVHLGMSGSLRIVAPGSPPKRHDHVDLALDDGHCLRFHDPRRFGLFLWTPE
SPEIAQVQHPLLRDLGPEPLGDSFDGDYLHALSRTRRVAIKSFIMDAAVVVGVGNIYANE
SLFLAGIHPARHCHRVGLERYRRLAATIRAVLRASIEQGGTTLRDFVNEDGQPGYFAQSL
RVYGHAGEPCGICGEPLRVKRIGQRSSFFCPRCQH
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacttcccgaagtcgaaaccacgctacgcggcatccgtccgcacctggagggc
cgccggatcgcgcgcctgctggtgcgcgatccgcgtctgcgtctgccgattccgcccgag
actccggaactggtcgccggacagatcatcggcgcgcttgcgagacgtagcaaatatctg
ctgatcggactcgagcgcggcgcgctgatcgtccatctgggcatgtccggcagcctgcgg
atcgtcgcccccggcagtcctccgaaacggcacgatcatgtggatctggcgctcgacgac
gggcattgtctgcgctttcatgacccgcgccgcttcggtctctttctctggacgcccgag
tcgccggagattgcgcaagtccagcatccgctgttgcgcgatctgggaccggagccgctg
ggcgactcgttcgacggagactatctccatgcactgagccgaacgcggcgggtcgcgatc
aagagcttcatcatggatgcggcggtggtggtcggggtcggcaacatctacgccaacgaa
tcgctttttctggccggtatccatcccgcgcgccactgtcaccgcgtcggtctggaacgc
taccggcggctggccgcgacgatccgcgcggtcctgcgggcgtccatcgaacagggcgga
accacgctgcgggacttcgtcaacgaggacgggcaacccggctatttcgcccaatcgcta
cgggtttacggacacgcgggcgagccgtgtggaatctgcggcgaacccttgcgagtcaaa
cggatcggacagcggtcgagctttttctgtccgcgctgtcaacattaa
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