Thiocystis violascens: Thivi_3755
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Entry
Thivi_3755 CDS
T02138
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tvi
Thiocystis violascens
Pathway
tvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thivi_3755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvi03019
]
Thivi_3755
03009 Ribosome biogenesis [BR:
tvi03009
]
Thivi_3755
Enzymes [BR:
tvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thivi_3755
Messenger RNA biogenesis [BR:
tvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thivi_3755
Ribosome biogenesis [BR:
tvi03009
]
Prokaryotic type
rRNA helicases
Thivi_3755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_30
GTP_cyclohydro2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFL75600
UniProt:
I3YF32
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All DBs
Position
complement(4083341..4085248)
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AA seq
635 aa
AA seq
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MDTPDTSTGFGALGLNPIIEQTVRDLGYETPTAIQSQCIPHLLAGRDLLGQAQTGTGKTA
AFALPLLSRIDPELHSPQILVLAPTRELALQVSEAFQGYAKNIKGFHVLPIYGGQAYGLQ
LSQLRRNPQVIVGTPGRVMDHIRRGTLCLDGIKTLVLDEADEMLNMGFAEDIDWIFEQAP
KERQVALFSATMPPAIRRVAQDRLVDPVEVRIASASATVDTIDQHHCVVTRFHKLDVLTR
ILELEPFDGMLIFVRTKNATTELSDKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDI
LVATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLR
AIERTIRRDVPAMDPPSAAALSQSRIDRFITEVRTTMTEQDLDFFYRLLARIGQEQEIEI
MDIAAALAFLNQRERPLNVKEDLPRPAAPKREWSERPPRSEGRDERRPRPERDDSRPRTE
HAQGRREDADLVSYRIEVGHQHGATPREIVGAIANEGGIEGRYIGRINIQDDHSIVDLPK
GMPREVVNHLKRVFVRGQALRISPADGTRPAEASHGHAPSPKYGQTPGQAQDKTPRAAGG
FRRQSGDGSAPRRGPPSKDSSGFRADRGSSRKPRD
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggatacccccgacacgagcaccggtttcggcgcactcggtctcaatcccatcattgaa
caaactgtccgcgatcttggttacgaaacgccaaccgcgattcagagtcagtgcatcccg
catctgctcgccggacgtgacctgctcggccaggcccagaccggcaccggcaaaaccgcc
gccttcgcgctgccgctgcttagccgcatcgaccccgaactccacagcccccagatcctg
gtgctggcgccgacccgcgagctggcgctccaggtgtccgaggcctttcagggttacgcc
aaaaacatcaagggcttccatgtcctgcccatctatggcgggcaggcgtatgggcttcag
ctcagtcagctccggcgcaacccgcaggtgatcgtcgggacgccggggcgcgtcatggac
cacatccgccgcggcaccctgtgcctggacggcatcaagaccctggtgctggacgaggcc
gacgagatgctcaacatgggcttcgcggaggacatcgactggatcttcgagcaggccccg
aaagagcgtcaggtcgcgctcttctccgccaccatgccgccggcgatccgccgggtcgcc
caggatcgtctcgtcgatccggtcgaggtgcggatcgcctcggcctccgcgaccgtcgac
accatcgaccagcatcactgcgtcgtcacccgcttccataagctcgacgtgctcacgcgc
atcctggaattggaaccgttcgacggcatgttgatcttcgtgcgcaccaagaacgccacc
accgaactctccgacaagctcaaggcccacggcttcgccgccgaaccgctgaacggcgac
atgaatcaggagatgcgcgagcgcacggtggagcgtctgaagcagggtcaactcgacatc
ctggtcgccaccgatgtcgccgcgcgcgggctcgatgtcgagcgcatcagccatgtcgtc
aactacgacatccccaccgatccctcggcctatgtgcatcggatcggtcgcaccgggcgc
gcgggtcgcgccgggcgcgccatcctgctggtcgaaccgcgcgaacgcggtctgctgcga
gcgatcgagcggaccatccgacgcgatgtcccggccatggacccgccctcggccgccgcc
ctgagccaatcgcggatcgaccgcttcatcaccgaagtgcgcacgacgatgaccgagcag
gatctcgacttcttctaccgcctgctcgcccgcatcggccaggagcaggagatcgagatc
atggacatcgccgccgcgctggcctttctgaaccagcgcgaacggccgttgaacgtcaag
gaagatctgccacgcccggccgcgcccaaacgcgaatggtccgagcgtcctccgcgttcg
gaaggccgggacgagcgtcggccacgcccggagcgtgacgacagccggccacgaacagag
cacgcgcagggccgacgggaagacgcggatctggtcagttaccgcatcgaggtcggccac
cagcacggcgcgacgccgcgcgagattgtcggcgccatcgccaatgaaggcgggatcgaa
ggccgctacatcggacgcatcaacatccaggacgaccattccatcgtcgatctccccaag
ggcatgccgcgcgaggtggtcaatcatctcaaacgggtcttcgtccgcggtcaggcgctg
cgcatttcgcccgccgacgggaccagacccgcggaagcctcccacgggcatgcgcccagc
ccaaaatacggccagacaccgggccaggcgcaggacaaaacgcctcgcgcggctggcggt
tttcgtcgccagagcggggatggaagcgccccgcgtcgcggcccgccgtccaaggattcc
agcggctttcgcgcggatcgggggtcaagccgcaaaccgcgtgactga
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