Trinickia violacea: FAZ95_02920
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Entry
FAZ95_02920 CDS
T09503
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tvl
Trinickia violacea
Pathway
tvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ95_02920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvl03019
]
FAZ95_02920
Enzymes [BR:
tvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAZ95_02920
Messenger RNA biogenesis [BR:
tvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAZ95_02920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
CMS1
HI1480
Sacchrp_dh_NADP
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QCP48235
UniProt:
A0A4P8IL11
LinkDB
All DBs
Position
1:complement(666614..668263)
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AA seq
549 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTSPTPIQKQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLESRQPGAHNAKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDVSQLEILVLDEADRMLDMGFIHDIKRVLAKLPP
KRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIYPVDRDRKRELLTHL
IRQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVL
VATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDELQLLKD
IEKLIKRSVPQEVIAGFEPDPDAKPEPIQRRGQGGGGGGRQPRQGQGQAQGQKQGGAARR
EGAAPSAAKQGQRTQPAPRREGGSEAGARQGRSAPAGASAPAASAQPRQDTRRAPARNAS
AAKPQSQNTQRHDSARGEARAPKHDNASANNNHAGNRKPPSNPGALLGGAPRSDTSRRGH
PARNGQRGR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaaccgttggtgcgagccgttcacgaactaggc
tacacgtcccccactccgatccagaaacaggcgatcccggccgtcctcaacggcggcgac
ctgctcgccggtgcacagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctggaatcgaggcagcccggcgcgcacaacgcgaagcgcgcagtgcgcgccctg
atcctcacgccgacgcgcgagctcgccgctcaagtcgaagaaagcgtgcgcgcgtacggc
aagtatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcaaatc
gacgcgttgaagcgcggtgtcgatatcgtcgtcgcgacgccggggcggttgctcgatcac
atgcagcaaaagacgatcgacgtgtcgcagctcgagatcctcgtgctcgacgaagccgac
cgcatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctcccgccg
aagcgccagaacctgctcttctcggcgacgttctccgacgagatcaaggcgctcgccgac
aacctgctcgattcgcccgcgctgatcgaagtcgcacgccgcaatacgacggccgagacg
gtcgcgcagaagatctatccggtcgatcgcgaccgcaagcgcgagctgctcacgcatttg
atccgtcagcacaactggtttcaggtgctcgtcttcacgcgcacgaagcacggcgcgaac
cgtcttgccgagcagttgacgaaggacggcatcagcgcgctcgcgatccacggcaacaag
agccaatcggcgcgtacgcgcgccctcgcggagttcaagaacaacacgctgcaagtgctc
gtcgcaaccgacatcgccgcgcgcggcatcgatatcgatcaactgccgcacgtcgtcaat
tacgatctgccgaacgtgcccgaggattacgtgcaccgaatcggccgcacggggcgcgcg
ggtgcgagcggtgaagccgtgtcgctcgtgtgcgtcgacgaactgcagttgctcaaggac
atcgagaagctcatcaagcgcagcgtgccgcaggaagtgatcgcaggcttcgagcccgat
ccggatgcgaagcccgagccgattcaacgtcgcggacaaggtggcggcggcggtggtcgt
cagccgcgtcaaggtcaggggcaagctcaggggcaaaaacaaggcggcgcagcgcgacgc
gaaggcgcggcaccgtcggctgcgaagcaagggcagcgtactcagccagcgcctcgccgt
gaaggcggcagcgaggctggagcgcgccaaggtcgttcggcaccggcaggcgcgagcgca
ccggcggcatcggcgcagccgcgtcaagatacacgccgcgcccccgcgcgcaatgcatcg
gcagcgaagccgcaatcgcaaaacacgcagcgccatgattcggcccgaggcgaagcgcgt
gcaccgaagcacgacaacgcttccgcaaacaacaaccatgccggcaaccgcaagccgcca
agcaaccccggcgcgctgctcggcggcgcaccgcgcagcgatacgtcacgccgcggacac
cccgcgcgcaacggtcagcgcggccgttga
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