Trinickia violacea: FAZ95_05660
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Entry
FAZ95_05660 CDS
T09503
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tvl
Trinickia violacea
Pathway
tvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ95_05660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvl03019
]
FAZ95_05660
Enzymes [BR:
tvl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAZ95_05660
Messenger RNA biogenesis [BR:
tvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAZ95_05660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
HAD
RPC3_helical
Motif
Other DBs
NCBI-ProteinID:
QCP48721
UniProt:
A0A4P8ILF5
LinkDB
All DBs
Position
1:1235384..1236823
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AA seq
479 aa
AA seq
DB search
MSDPAVTPVQPTFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTPLRSAV
VFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVA
EGDKQPAVVQLIRQRGLKQVIVFCNSKIGAGRLARQLERDGVVATAIHGDKSQLERMQAL
DAFKRGEVEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNEKKQLADIEKLIKRPLDVERLTVDAPVRHHSEARGRRDRDDRDERSSRRRTGTFER
THHRHAPIDDFFLKPYEPSPSALKRDEAPAPEPAAKPATKQPLAALLGGFGMPRKTTSS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatccagctgtcacgcctgtccaaccgaccttcgatcagttcggcctcgccgcc
gatatcctgaaagccatcgcggagcagggctacacgacgcccacgccgatccaggcgcag
gcgattccggtcgtgctgtccggccgcgacgtgatgggcgcggcgcaaaccggcaccggc
aagacggcgagcttctcgctgccgatcatccagcggctgctgccgcaagctagcacgagc
gcgtcgccggcgcgccacccggtccgcgcgctgatcctcacgccgacgcgcgaactcgcc
gaccaggttgccgcgaacgtgcagtcctacgcgaagcacacgccgctgcgcagtgccgtg
gtgttcggcggggtcgacatgaatccgcaatcggccgagctgcggcgcggcgtcgaaatc
ttgatcgcgacgccggggcgtttgctcgatcacgttcagcagaagaccgcgaatctcggc
caagtgcagatgctcgtgctcgacgaagccgaccgcatgctcgacatgggcttcctgccc
gacttgcagcgcatcctgaacctgctgccgaaagagcgccagacgctgctcttttccgcg
acgttttcgggtgaaatcaagaagctcgcgtcgacctacctgcgcaacccgcagacgatc
gaagtcgcgcgcagcaattcgacggccaccaacgtgacgcagatcgtctacgaagtggcc
gaaggcgacaagcagccggcggtcgtgcagttgatccgccagcgcggcttgaagcaggtc
atcgtgttctgcaacagcaagatcggggcggggcgtttggctcgccagctcgagcgcgac
ggcgtcgtggcgacggcgattcacggcgacaagtcgcagctcgagcggatgcaggcactc
gatgcattcaagcgcggcgaggtcgaagcgctggtggcgaccgacgtcgccgcgcgcggg
ctcgacatcgccgagctgccggccgtcatcaacttcgatctgccgttcaacgccgaggac
tacgtgcaccggatcggccgtaccggccgcgcgggggcgtcgggcgacgcgctgtcgctg
tgcagcccgaacgagaagaaacagctcgcggacatcgaaaagctcatcaagcggccgctc
gacgtcgagcgtttgaccgtcgatgcgccggtgcgccaccacagcgaagcgcggggacgc
cgcgaccgcgacgaccgcgacgagcgttccagccgccgccgcacgggcaccttcgagcgc
acgcatcatcgtcatgcgccgatcgacgatttcttcctgaagccctacgagccctcgccg
tcggcgctcaagcgcgacgaggcgccggcgcccgagcccgcagccaagccggcgacgaag
cagccgctcgcggcattgctgggcgggtttgggatgccccgcaagacgacttcgtcctga
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