KEGG   Trinickia violacea: FAZ95_05660
Entry
FAZ95_05660       CDS       T09503                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
tvl  Trinickia violacea
Pathway
tvl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tvl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FAZ95_05660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tvl03019]
    FAZ95_05660
Enzymes [BR:tvl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     FAZ95_05660
Messenger RNA biogenesis [BR:tvl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FAZ95_05660
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 ERCC3_RAD25_C HAD RPC3_helical
Other DBs
NCBI-ProteinID: QCP48721
UniProt: A0A4P8ILF5
LinkDB
Position
1:1235384..1236823
AA seq 479 aa
MSDPAVTPVQPTFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTPLRSAV
VFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVA
EGDKQPAVVQLIRQRGLKQVIVFCNSKIGAGRLARQLERDGVVATAIHGDKSQLERMQAL
DAFKRGEVEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNEKKQLADIEKLIKRPLDVERLTVDAPVRHHSEARGRRDRDDRDERSSRRRTGTFER
THHRHAPIDDFFLKPYEPSPSALKRDEAPAPEPAAKPATKQPLAALLGGFGMPRKTTSS
NT seq 1440 nt   +upstreamnt  +downstreamnt
atgtccgatccagctgtcacgcctgtccaaccgaccttcgatcagttcggcctcgccgcc
gatatcctgaaagccatcgcggagcagggctacacgacgcccacgccgatccaggcgcag
gcgattccggtcgtgctgtccggccgcgacgtgatgggcgcggcgcaaaccggcaccggc
aagacggcgagcttctcgctgccgatcatccagcggctgctgccgcaagctagcacgagc
gcgtcgccggcgcgccacccggtccgcgcgctgatcctcacgccgacgcgcgaactcgcc
gaccaggttgccgcgaacgtgcagtcctacgcgaagcacacgccgctgcgcagtgccgtg
gtgttcggcggggtcgacatgaatccgcaatcggccgagctgcggcgcggcgtcgaaatc
ttgatcgcgacgccggggcgtttgctcgatcacgttcagcagaagaccgcgaatctcggc
caagtgcagatgctcgtgctcgacgaagccgaccgcatgctcgacatgggcttcctgccc
gacttgcagcgcatcctgaacctgctgccgaaagagcgccagacgctgctcttttccgcg
acgttttcgggtgaaatcaagaagctcgcgtcgacctacctgcgcaacccgcagacgatc
gaagtcgcgcgcagcaattcgacggccaccaacgtgacgcagatcgtctacgaagtggcc
gaaggcgacaagcagccggcggtcgtgcagttgatccgccagcgcggcttgaagcaggtc
atcgtgttctgcaacagcaagatcggggcggggcgtttggctcgccagctcgagcgcgac
ggcgtcgtggcgacggcgattcacggcgacaagtcgcagctcgagcggatgcaggcactc
gatgcattcaagcgcggcgaggtcgaagcgctggtggcgaccgacgtcgccgcgcgcggg
ctcgacatcgccgagctgccggccgtcatcaacttcgatctgccgttcaacgccgaggac
tacgtgcaccggatcggccgtaccggccgcgcgggggcgtcgggcgacgcgctgtcgctg
tgcagcccgaacgagaagaaacagctcgcggacatcgaaaagctcatcaagcggccgctc
gacgtcgagcgtttgaccgtcgatgcgccggtgcgccaccacagcgaagcgcggggacgc
cgcgaccgcgacgaccgcgacgagcgttccagccgccgccgcacgggcaccttcgagcgc
acgcatcatcgtcatgcgccgatcgacgatttcttcctgaagccctacgagccctcgccg
tcggcgctcaagcgcgacgaggcgccggcgcccgagcccgcagccaagccggcgacgaag
cagccgctcgcggcattgctgggcgggtttgggatgccccgcaagacgacttcgtcctga

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