Trinickia violacea: FAZ95_05675
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Entry
FAZ95_05675 CDS
T09503
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tvl
Trinickia violacea
Pathway
tvl03030
DNA replication
tvl03430
Mismatch repair
tvl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAZ95_05675 (dnaE)
03430 Mismatch repair
FAZ95_05675 (dnaE)
03440 Homologous recombination
FAZ95_05675 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvl03032
]
FAZ95_05675 (dnaE)
03400 DNA repair and recombination proteins [BR:
tvl03400
]
FAZ95_05675 (dnaE)
Enzymes [BR:
tvl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FAZ95_05675 (dnaE)
DNA replication proteins [BR:
tvl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FAZ95_05675 (dnaE)
DNA repair and recombination proteins [BR:
tvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FAZ95_05675 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
P63C
RecG_wedge
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QCP51656
UniProt:
A0A4P8ITG2
LinkDB
All DBs
Position
1:1238861..1242436
Genome browser
AA seq
1191 aa
AA seq
DB search
MAPMSDPRFVHLRVHSEFSIADGIVRLDDIVKAAADDGQGALALTDLGNAFGLVRFYKEA
RGNGVKPIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLTKAWLTNQYRGRAEIE
AEWLESGLEQGLLAISGAQQGDIGLALAAGNEEAAKRCAARWVKRFPNAFYIELQRCGQP
GGEAYVQQAVALAASLKLPVVATHPTQFMTPDDFTAHEARVCISEGDMLANPRRQKRFTT
EQFFRTQEDMAALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQL
SKEGLEERLEQLYPNQAERDQQRDTYYQRLDFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIAD
AMKEEPLLQERNDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
DGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLAQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAK
HREIFAEGAAKNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCLTNGMAVLPPDINRSAYRFEPVAEADGKRSRTIRYGLG
AVKGSGQNAIEEILRAREEGAFQDLFDFCARIDRRVVNRRTVEALIRAGAFDTLHDNRAQ
LIASVPLAMEAADQASANAMQAGLFDMGDAPSQGHELVAEPAWHEKKKLQEEKSALGFYL
SGHLFDAYKDEVRRFVRQKLGELKEGRDKLVAGIISSLRTQMTQRGKMLIALIDDGTGAC
EVTVFNEQYEAHKELFKEDELLVVSGQARNDAFTGGIRFTVDTVMDLQRARSRYAQAVKL
QVNGNADAVALRRVLEAHCAGPAVVAEPAAVSAPARPARGGGPAGRGGQGGDSRQRAPVN
IPNGLAVQIVYRSDHAEGEVRLGDAWRVKPTDELLAALRGEFAGSAIEIVY
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atagcgcccatgtcagatccccgcttcgtccatcttcgcgtccactccgaattctcgatc
gccgacggcatcgtgcgccttgacgacatcgtcaaagccgccgccgacgacggccagggc
gcactcgcactgaccgacctcggcaacgcgttcggtctcgtccgtttctacaaggaagcg
cgcggcaacggggtcaaacccattgccggctgcgacgtctggatcaccaatcccgatgat
cgcgacaagccttcgcgtctgctcctgctcgtcaaagatcgccgcggctacctcaatctg
tgcgagctgctcacgaaggcgtggctcacgaaccagtatcgcgggcgcgcggagatcgag
gccgagtggctcgaatccggcctcgaacaaggcttgctcgcgatctcgggcgcgcagcag
ggcgatatcggcttggcgcttgccgccggcaacgaggaagcagcgaagcgttgcgcagcg
cgctgggtcaagcgcttcccgaacgcgttctatatcgagttgcaacgctgcggtcagccg
ggcggcgaggcatacgtgcagcaggccgttgcgctggccgcatcgttgaagctgccggtg
gtggcgacgcaccccacccaattcatgacgcccgacgacttcaccgcgcacgaagcgcgc
gtgtgcatttcggaaggcgacatgctcgcgaacccgcgccgtcagaagcgcttcacgacc
gaacagtttttccgtacgcaggaggacatggccgcgctgttcgcggacattccgtcggcg
ctcgcgaacaccgtcgaaatcgcaaagcgctgcaacctgacgctcgaactcggcaagccg
aagctgccgctcttcccgacgcccgacggcatgtcgctcgacgactatctcgtgcagttg
tcgaaggaaggtctggaggagcggctcgagcagctctatccgaaccaggccgagcgcgac
cagcagcgcgacacgtactaccagcgtctcgacttcgagtgcggcacgatcatcaagatg
ggcttccccggctacttcctgatcgtggcggacttcatcaactgggcgaagaacaacggc
gtgccggtgggtccgggccggggttccggcgcgggctcgctcgtcgcctacgcgctcggg
attaccgatctcgatccgctgcgctacaacctgctgttcgagcgtttcctgaatccggaa
cgggtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatc
cagtacgtgaaggagaagtacggcgcggacgcggtctcgcagatcgcgacgttcggcacg
atggctgcgaaggcggcggtgcgcgatatcggccgcgtgctcgatctcggctacatgttc
acggatggcgtcgcgaagctgattccgttcaagcccggcaagcacgtgacgattgccgac
gcgatgaaggaagagccgctcctgcaggagcgcaacgacaacgaggacgaagtgcggcag
cttctcgagctggcgcagcgcgtcgaaggtctcacgcgtaacgtcggcatgcacgcgggc
ggcgtgctgatcgcgcccggcaagctcaccgatttctgtccgctctatacgcagggcgac
gacggcggcgtcgtaagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaag
ttcgacttcttgggtctgaccacgctcacgattctcgattgggccgagcgctacattcgc
cggctcgatccgtcgaagcaggattggtcgttggctcaagtgccgctcgacgatcccgcc
tcgttctcgatcctcaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggc
atgcagggcatgctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtg
gcgctgtaccgcccaggcccgatggacctgattccgagcttctgcgcgcgcaagcacggg
cgcgaggtggtcgagtatcccgatcctcgcgtcgaacctgttctgaaagagacctacggc
atcatggtctatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctc
ggcggcgcggacttgctgcgccgcgcgatgggcaagaaaaagcccgaggagatggcgaag
caccgcgagatcttcgccgagggcgcggcgaagaacggcctcacgcgcgagaaagccgac
gaaaccttcgacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcc
gcgtatgcgctgctggcgtaccacaccgcgtggctgaaggcgcaccatccggcggagttc
atggcagccaacatgagcttggcgatggacgataccgacaaggtcaagatcctcttcgaa
gactgcctcacgaacgggatggccgtgctgccgccggacatcaaccgttcggcgtaccgc
ttcgagccggtggccgaagccgacggcaagcgctcgcgcacgatccgctacgggctcggc
gcggtgaagggcagcggccagaacgcgatcgaggaaatcctgcgtgcgcgcgaagaaggg
gcgttccaggatctgttcgatttctgcgcgcgtatcgaccgccgcgtcgtcaatcgccgg
acggtcgaggcgctgatccgcgcgggcgctttcgatacgctccacgacaaccgcgcgcaa
ctgatcgcctcggtgccgctcgcgatggaggccgccgatcaggccagcgcgaacgcgatg
caggccggcttgttcgacatgggcgatgcgccctcgcaaggccacgagctcgtcgccgaa
cccgcgtggcatgagaaaaagaagctgcaggaagaaaagagtgcactgggcttctatctg
tccggtcacttgttcgacgcctacaaggacgaagtgcgccgcttcgtgcggcagaagctc
ggcgagctcaaggaaggccgcgacaagctggtcgccggcatcatctcgtcgctgcgcacg
cagatgacccagcgcggcaagatgctgatcgcgctgatcgacgacggtaccggggcgtgc
gaagtcacggtcttcaacgagcagtacgaggcacataaggagctgttcaaggaagacgag
ctgctcgtcgtgtcggggcaggcgcgcaacgatgcgttcacgggcggcatccgctttacg
gtcgatacggtgatggatctccagcgcgcgcgcagccgctacgctcaggcggtcaagctg
caggtgaacggcaatgcggacgcggttgcgctgcggcgcgtgctcgaagcgcattgcgcg
ggcccggctgtggtggccgaaccggcggcggtttccgctccggcgcggccggcgcgcggc
ggcggcccggcgggccgcggaggccaaggtggcgatagccggcagcgcgcccccgtgaat
attccgaacggcctcgctgtgcagatcgtctatcgcagcgatcacgcagagggtgaggtg
cgcctcggcgacgcgtggcgcgtgaagccgaccgacgaattgctggcggcattgcgcggc
gaatttgcgggaagcgcgatcgagatcgtttattga
DBGET
integrated database retrieval system
