Trinickia violacea: FAZ95_05975
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Entry
FAZ95_05975 CDS
T09503
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tvl
Trinickia violacea
Pathway
tvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ95_05975 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvl03019
]
FAZ95_05975 (pnp)
03016 Transfer RNA biogenesis [BR:
tvl03016
]
FAZ95_05975 (pnp)
Enzymes [BR:
tvl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FAZ95_05975 (pnp)
Messenger RNA biogenesis [BR:
tvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FAZ95_05975 (pnp)
Transfer RNA biogenesis [BR:
tvl03016
]
Prokaryotic type
tRNA degradation factors
FAZ95_05975 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
OB_PDCD11
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_TP0910
KH_KhpA-B
UPF0181
Motif
Other DBs
NCBI-ProteinID:
QCP48776
UniProt:
A0A4P8IKL2
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All DBs
Position
1:1304769..1306907
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AA seq
712 aa
AA seq
DB search
MTMFNKVVKEFQWGQHKVRMETGEIARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFP
LTVDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVVHVM
SVNPEVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRAQIKESRLDLV
VAGTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAPK
DEALISRVTALAQGDLLAAYQIRDKQARSTKLKEVYAAVSAKLEEEAAAAGTTAADKATV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVA
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTAEGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTSAVAGANTELSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKKRIENITAEIEVGQVYEGTVLKLLEFGAIVNILPGKDGLLHISE
IVNERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAQSESAPQQ
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgactatgttcaataaagtcgtcaaagagttccagtggggacaacacaaggtccggatg
gaaacgggcgaaatcgctcgtcaggcaagcggcgcggtgatcgtcgatgtcgaagacacc
gtggtgctcgcgaccgtcgtcggcgcgaagtcggccaagccgggtcaggactttttcccg
ctgacggtcgattacctcgagaagacctattccgccggtaagatccccggcggcttcttc
cgccgcgaaggccgtccgtccgagcatgaaacgctgacgtcgcgcctgatcgaccgtccg
ctgcgtccgctgttcccggaaggcttctataacgaagtgcaggtcgtcgtgcacgtgatg
tcggtgaatccggaagtcccggccgacatccccgcgctgatcggcgcttcggccgccctc
gcggtgtcgggcctgccgttcaacggtcccgttggcgccgcgcgcgttgcctacatcaac
aacgagtacgtgctgaacccgacgcgcgcccaaatcaaggaatcgcgcctcgacctcgtc
gtcgccggtaccgagcgtgccgtgctgatggtcgaatcggaagccgaccagctgccggaa
gacgtgatgctgggcgccgtggtgttcggccacgagcagatgcaaacggcaatcgacgcc
atccacgagctcgtgcgtgacggcggcaagccggaatgggactggcagccggcgccgaag
gacgaggcgctgatctcgcgcgtgacggcactcgcgcaaggcgatctgctcgccgcgtat
cagatccgcgacaagcaagcgcgttcgacgaagctgaaggaagtctacgcagcggtgtcg
gcgaagctcgaagaagaagccgcagccgcaggcacgacggcggccgacaaggccaccgtc
ggcaacgtcctgttcgacatcgaagcgaagatcgtccgcagccagatcctgaacggcgag
ccgcgcattgatggccgcgacacgcgcacggtgcgtccgatcgagattcgcaccggcgtg
ctgccgcgcacccacggttcggcgctcttcacgcgcggcgaaacgcaggcgctcgtcgtc
gcgacgctcggcaccaagggcgacgaacagatcatcgacgcgctcgaaggcgagtatcgc
gaccgcttcatgctccactacaacatgcctccgttcgcgaccggcgaaacgggccgcgtc
ggttcgccgaagcgccgtgaaatcggtcacggccgtctcgcgaagcgcgcgctcgtcgcg
tgcctgccgagcgccgacgaattcggctactcgatccgcgtcgtgtcggagatcaccgag
tcgaacggttcgtcgtcgatggcttcggtctgcggcggctgtctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtcgcgggcatcgcgatgggcctgatcctcgagggcaac
aagttcgcggtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtggccggtacggcagaaggcgtgaccgcgctgcagatggacatcaagatccagggc
atcaccaaggaaatcatgcaggtcgcgctcgcgcaggcgaaggaaggccgcatgcacatt
ctcggcaagatgacctccgccgtggccggcgcgaacaccgagctgtcggaattcgcaccg
cgcatgatcaccatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggtggt
tcggtgattcgcgcgctgaccgaagaaacgggcacgacgatcgatatctccgacgacggc
gtcgtcaccatcgcgagcacgagcagcgaagggatggccgaggcgaagaagcgcatcgag
aacatcacggcggaaatcgaagtcggccaggtgtacgaaggcaccgtgctcaagctgctc
gagttcggcgcgatcgtgaacatcctgccgggcaaggatggtctgctgcacatctccgag
atcgtcaacgagcgcatcaaggacatcaacgactacctgaaggaaggccagcaggttaaa
gtcaaggtgatccagacggacgagaagggccgtgtgcgtctgtccgcgaaggcgctgctg
aacgaagcggcacagtccgaatcggcgccgcagcagtaa
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