Trinickia violacea: FAZ95_09355
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Entry
FAZ95_09355 CDS
T09503
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tvl
Trinickia violacea
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tvl03016
]
FAZ95_09355
Enzymes [BR:
tvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FAZ95_09355
Transfer RNA biogenesis [BR:
tvl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FAZ95_09355
Prokaryotic type
tRNA splicing ligases
FAZ95_09355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QCP49361
UniProt:
A0A4P8IMZ8
LinkDB
All DBs
Position
1:2070754..2071974
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AA seq
406 aa
AA seq
DB search
MSLVDYQLMEVTGGKVVKMWTQGVAIEEAARRQLRNTARMPFVFRHVAVMPDAHVGKGST
IGSVIPTQGAIIPAAVGVDIGCGMIAVRTTLTAADLPDSLSGVRGAIERAVPHGGAPGRR
DPGAWSRPPPAADDAWKLLAPGFQRIVDKYPSLACTNNRAHVGTLGSGNHFIEVCLDEDN
GVWFMLHSGSRGVGNAIGSLFITLAQADMRQHLANLPDKDLAYFKEGSRHFDDYVEAVGW
AQRYARCNREVMMNAVIGAVRATVGKPFTIDEHAVNCHHNYVQKERHFGADMYVTRKGAL
SARAGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRAMSRTEAKRRFTVQDQISATL
HVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVYTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggtcgactatcagctaatggaagtgacaggtggcaaggtcgtgaagatgtgg
acacagggcgtcgcgatcgaggaagcggctcgccggcaactgagaaacaccgcccgcatg
ccgtttgtgttcaggcacgttgccgtcatgccggacgcgcacgtgggcaaaggctcgacg
atcggcagcgtgattccgacacaaggggcgatcatcccggcggcggtgggcgtcgatatt
ggttgcggaatgatcgcggttcgcacgacgctgactgccgcagacctgcccgattcgctt
tccggcgtgcgcggcgcgatcgagcgcgctgtgccgcacggcggtgcgccggggcgacga
gacccgggtgcatggtcgcgtccgccgccggccgccgacgacgcctggaagctgctggcg
cccgggttccagcgcatcgtcgacaagtatccctccctcgcgtgcacgaacaaccgcgca
cacgtgggcacgctcggctccggcaatcacttcatcgaggtatgtctcgacgaagataac
ggcgtctggttcatgctgcacagcggatcgcgtggcgtgggcaacgcgatcgggagcctc
ttcatcacgctggcccaggccgacatgcgtcaacacctcgcgaatctgccggacaaagac
ctcgcgtacttcaaggaaggcagtcggcacttcgatgactacgtggaggctgtcggctgg
gcacagaggtacgcgcgctgcaaccgtgaggtcatgatgaatgccgtgatcggcgcggtg
cgcgcgactgtcggcaaacccttcaccatcgacgagcacgcggtgaactgccaccacaat
tacgtgcagaaggaacggcacttcggcgccgacatgtacgtaacgcgtaaaggggcgctg
tcggcgcgagccggcgagcttggcatcattcccggttcgatgggcgcgaagagctttatc
gttcgtgggctcggcaatgaagagagcttctgctcgtgcagtcacggcgccgggcgcgcg
atgagccggaccgaggccaaacgtcgcttcaccgtccaggatcaaatcagcgcgacgttg
catgtcgaatgccgaaaggatgcaggtgtcgttgatgaaattccgatggcctacaaggac
atcgacgcggtgatggccgcgcagcggagcttggtcgaggtggtatatacgctgcggcag
gtggtttgtgtgaagggttag
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