Trinickia violacea: FAZ95_09870
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Entry
FAZ95_09870 CDS
T09503
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tvl
Trinickia violacea
Pathway
tvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ95_09870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvl03021
]
FAZ95_09870
03019 Messenger RNA biogenesis [BR:
tvl03019
]
FAZ95_09870
Transcription machinery [BR:
tvl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FAZ95_09870
Messenger RNA biogenesis [BR:
tvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FAZ95_09870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QCP49456
UniProt:
A0A4P8IMA8
LinkDB
All DBs
Position
1:complement(2176145..2177407)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKSQHVSQLIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEVLQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKGNSEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagcttaagtctcagcacgtgtcgcaattgatcgagatggcaaacggc
ctcgagatcgaaaacgcgaaccgcctgcgcaagcaggaactcatgttcgccattctcaag
aagcgcgccaagaccggcgaaaccattttcggcgacggcacgctcgaagtgctgcccgac
ggcttcggcttcctgcgctcgcctgaaatgtcgtacctcgcgagcaccgacgacatctac
atcagcccgtcgcagatccgccgcttcaacctgcacaccggcgacaccatcgaaggcgaa
gtccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgttgctcgagcgcgaaatgcgcggcgaagagaacgtcaccggccgc
atcatcgacatgatcgcgccgatcggcaaaggccagcgcggcctgctcgtcgcttcgccg
aagtcgggcaagaccgtgatgcttcagcacatcgcgcacgcgatcaagcagaaccatccc
gatgtcgtcctgttcgtgctgctcatcgacgagcgtccggaagaagtgacggaaatgcag
cgctcggtggcgggcgaagtgatcgcgtcgacgttcgacgaaccggccacgcgtcacgtg
caagtcgccgaaatggtgatcgagaaggccaagcgcctcgtcgaaatgaagcacgatgtc
gtgattctgctcgactcgatcacgcgtctcgcacgtgcttacaacacggtcattccggcg
tcgggcaaggtgctgacgggcggtgtcgatgcgaacgcgctgcagcgtccgaagcgcttc
tttggcgctgcgcgcaacatcgaggaaggcggctcgctcacgatcatcggcaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctatgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcggcgtctcgcggaaaagcgcgtgtacccgtcgatcaacttg
aacaagtcgggcacacgccgcgaagaattgctgatcaaaccggaagtcctacagaagatc
tgggtgctgcgcaagttcatccacgatatggacgaagtcgaggcaatggaattcctgctc
gacaagatccgccagacgaagggcaattccgagttcttcgatctgatgcgccgcggcggc
tga
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