Trinickia violacea: FAZ95_09925
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Entry
FAZ95_09925 CDS
T09503
Symbol
rpoS
Name
(GenBank) RNA polymerase sigma factor RpoS
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
tvl
Trinickia violacea
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvl03021
]
FAZ95_09925 (rpoS)
Transcription machinery [BR:
tvl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FAZ95_09925 (rpoS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
HTH_20
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
QCP49465
UniProt:
A0A4P8IPD5
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All DBs
Position
1:2186966..2188057
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AA seq
363 aa
AA seq
DB search
MPKSKRRPQQDETETLSRVARASESDSGASTSEPEEELVENEPELEERHNGADDSGDAAD
SASEPAPDPDDFRALLQAELTADTIQHYLNRISVKPLLTVEEEQRYSRLAKAGEFEARQV
MIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPTRGFRFSTYATWWIRQS
IERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKNSMNSGEAADRRDASIDDIAYLTGKT
TDEVTDILALNEHTASLDAPLDLDPASSLLDLLSDDQSQSPDAEVQHRELETLTRAWLSR
LSDKHRHVIERRFGLNHIEPATLEELADEMGLTRERVRQIQQEALVRLKRFFASNGVRKD
AVL
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatcgaagcgccgcccgcagcaagatgagaccgaaacgctcagccgcgtcgcg
cgcgcctcggagtcggactccggcgcttcgacgagcgagcccgaggaggagctcgtcgag
aacgagcccgagctcgaagagcgtcacaacggtgcggacgattccggcgacgcggccgat
tcagcaagcgaacccgcacccgatcccgacgacttccgggcgctgctgcaggccgagctg
actgctgacacgattcagcactatctgaaccgcatcagcgtgaagccgctcctgaccgtc
gaggaagagcagcgctattcgcggctcgccaaagcgggcgagttcgaggcacgacaggtg
atgatcgagcgcaacctgcggcttgtcgtcagcatcgcgaagggctatctgaaccgtggt
gtgccgttgctcgatctgatcgaagaaggcaacctgggcctcatgcacgcgatcgagaaa
ttcgacccgacgcgcggcttccgtttttcgacgtatgcgacctggtggattcgccagagc
atcgagcgcgcgatcatgaaccaggcgcgcacggtgcggctgcccgtgcacgtgatccgc
gagctcaatcaggtgctgcgcgccaagcgtcacctggaaaagaattcgatgaattccggc
gaagcggcagaccggcgcgacgcgagcatcgacgatatcgcctacctgaccggcaagacg
accgacgaagtgaccgatatcctcgcactgaacgagcacacggcgtcgctcgacgcgccg
ctcgatctcgatcccgcaagcagcctgctcgatctgctgtcggacgaccagagccagtcg
cccgatgccgaagtccagcaccgcgaactcgaaacgctcacgcgcgcgtggctgtcgcgt
ttgtcggacaagcaccggcacgtgatcgaacgccgcttcgggctgaatcacatcgagccc
gcgacgctcgaagagcttgccgatgaaatgggcctcacgcgcgagcgcgtgcggcaaatc
cagcaagaagcgctcgtgcggttgaagcgcttctttgcgtccaacggcgtgcgcaaggac
gctgttctctaa
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