Trinickia violacea: FAZ95_09940
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Entry
FAZ95_09940 CDS
T09503
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tvl
Trinickia violacea
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tvl03009
]
FAZ95_09940 (rlmD)
Enzymes [BR:
tvl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FAZ95_09940 (rlmD)
Ribosome biogenesis [BR:
tvl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FAZ95_09940 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltrans_SAM
Methyltransf_23
RrnaAD
Methyltransf_11
Methyltransf_15
MTS
PCMT
N6_N4_Mtase
Methyltr_RsmB-F
TRAM
Ubie_methyltran
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
QCP51717
UniProt:
A0A4P8IU73
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All DBs
Position
1:2189904..2191208
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AA seq
434 aa
AA seq
DB search
MEARGVGRLVTETGEPGKVIFVEGALPGERVSYSSYRKKPSFEQAQVVDVLRESVLRTKP
QCRFFGTCGGCSMQHLDVRAQVAVKQRVLEDNLQHLAKLRAETVFRPIHGPSWGYRYRAR
LTVRNVAKKGGVLVGFHERKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSIRDRMPQI
ELAVGSQVTALVLRVLEPINAADEALLREFADAHQVQFWLQPKGPDTVVPFYPLDVPLDY
TLPEFNIRMPFKPTDFTQVNHPINRVLVGRALRLLAPARGDRVLDLFCGIGNFTLPLARL
AREVVGIEGSEALTTRALANAKENGVDGHTSFACRNLFEVTADDLRALGAFDKFLVDPPR
EGALAVSKALAEIAQSGDGPLPARIVYVSCNPATLARDAGLLVHEAGYRLKGAGVVNMFP
HTSHVESIALFERD
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgcgcggcgtgggtcgcctcgtgacggaaaccggcgagcccggcaaggtaatc
ttcgtcgaaggcgcgctgcctggcgagcgtgtcagctattcgagttatcgcaagaagccg
agtttcgagcaggcgcaggttgtcgacgtgttgcgtgaaagcgtgctccgcaccaaaccg
caatgccgttttttcggcacctgcggcggttgttcgatgcagcatctggacgtgcgcgcg
caggtcgccgtcaagcagcgcgtgctcgaagacaatctccagcatctcgcgaagttgcgc
gccgaaacggtgtttaggccgattcacgggccctcgtggggctaccgctatcgtgcgcgc
ctgactgtgcgcaacgtggcgaaaaagggcggtgtgctggtcggctttcacgagcgcaaa
agcagctacgtcgccgatatgacgagctgcgaagtgctgccgccgcatgtgtcggcgatg
ctcgtgccgttgcgccggctcgtcgaggggctgtcgattcgcgatcggatgccgcagatc
gagctggcggtcggctcgcaagtcacggcactggtgctgcgcgtgctcgagccgatcaac
gccgccgacgaggcgctgctgcgcgagttcgcggatgcccatcaggtgcaattctggctg
cagccgaagggccctgacacggtcgtgccgttctatccgctcgacgtcccgctcgactac
acgctgccggaattcaacatccggatgccgttcaagccgaccgatttcacgcaggtcaat
cacccgatcaaccgcgtgctggtgggccgggcattgcggctgctggcgcctgcgcgtggg
gaccgcgtgctcgatctcttttgcggaatcggcaacttcacgctgccgctggcgcgcctt
gcacgcgaggtcgtggggatcgaaggcagcgaagcgctgacgacccgcgcgctcgcgaac
gccaaagaaaacggtgtcgacgggcatacctcgttcgcctgccgtaatttattcgaggtc
acggccgacgacctgcgcgcgcttggcgcattcgacaagtttctcgtcgatccgccgcgc
gaaggcgcgctggctgtctcaaaggcgctcgccgagatcgcccagagcggcgacgggccg
ctgccggcgcgcatcgtctacgtgtcctgcaacccggcaacgctggcgcgcgacgcgggc
ctgctcgtccacgaggcgggctaccggctgaaaggcgcgggcgtggtcaatatgttcccg
cacacgtcccacgtcgaatcgatcgcgctgttcgaacgcgactaa
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