Trinickia violacea: FAZ95_12150
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Entry
FAZ95_12150 CDS
T09503
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
tvl
Trinickia violacea
Pathway
tvl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FAZ95_12150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvl03021
]
FAZ95_12150
Transcription machinery [BR:
tvl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FAZ95_12150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
DUF1822
PapC_N
HEPN_RiboL-PSP
Motif
Other DBs
NCBI-ProteinID:
QCP49858
UniProt:
A0A4P8ILR5
LinkDB
All DBs
Position
1:2685484..2686899
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AA seq
471 aa
AA seq
DB search
MSEISSSGIEDLRVGINALTSAQRRLQSSVGRTADPVALYMRDMSATPLLTRSEELALAR
EIEVRRAACIQELSICPAVQDELAQLMTEIIDAKAPANLYILGFEQDPASAASTSLIAAE
TTPDQGDIDLPLDESAVSEVGDEPSCAALAQALAQRLRQIVELTFSAREVLLAHGDDSVS
YRSRCRDLTDALSSIRFTARAADRLSGVLRLHATNQAHERVARLEHALQNAKTRLLKANL
RLVVSVAKKYLNRGPQLLDLIQEGNLGLIKAVDRYDYRRGFKFSTYATWWIRQSILYAIA
DQGRTIRVPVHTVDALNKLASIRHESAHRSGDRPGIAELAERMSVSEERICDLLSIVQEP
VSTNAPVTQDGGGTLEDAIADPGAQLPEDALIASRMRSAVLAAVDQLPARESTVLRLRFG
IGVPDAYSLREIGRQLNLSAERVRQIEAKAIERLRGSPQSEPLRTFTNVRH
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaaatcagcagcagcggtatcgaagatctccgggtcggcatcaatgcattgaca
agcgctcaacgtcgcctgcaaagctcggtcggccgaaccgcggaccccgtcgcgctctat
atgcgagacatgagcgcaacgcccttgcttacccgtagcgaagagctcgccctcgccaga
gagatcgaagttagacgcgcggcctgcattcaagagttgagcatttgccctgccgtgcag
gacgagctggcgcagttgatgaccgaaatcatcgatgccaaggcaccggccaacctttac
atcctcgggttcgagcaggacccagcatcggccgcctcgacatcgctcattgccgcggaa
acgacaccggatcagggtgacatcgacttgccgctagacgaaagcgccgtgtccgaagtc
ggtgacgaaccgtcgtgcgcagcgctcgcgcaagcgctggcccaacgcttgcggcagata
gtcgagttgacgttctccgcgcgtgaagtgttgctcgctcacggcgatgactcggtcagc
tatcgttcgcgttgccgtgacctcaccgacgccttgagttcgatccggtttaccgctcgg
gcggcagaccgattgagcggcgtcctccgccttcacgcgacgaatcaagcgcacgaacgc
gtggcccgcctcgaacacgctctgcagaacgcaaagacgaggctgctcaaggcgaatctc
cgtctggtcgtatcggtcgcgaagaagtatctcaaccgcggaccgcaactgctcgatttg
attcaggagggcaacctcggcctcattaaagccgtggatcgctacgactaccgccgcggc
ttcaaattctcgacctacgcgacctggtggatccggcagtccatcctctacgccattgcc
gaccagggccgcaccatccgcgttcccgtgcataccgtcgacgctttgaacaagctcgcg
agcatcaggcacgagtctgcgcaccgctccggagaccggcccggcattgccgagctcgca
gaaagaatgagcgtgtctgaagaaaggatttgcgacctcctgtccatcgtccaagagccc
gtttcgacgaacgctccggtaacgcaagatggcggcggcacgcttgaagacgcaatcgca
gatcccggcgcccagctgcccgaagacgccctgatcgcatcgcgtatgcgcagcgccgtg
ctcgcagccgtcgatcaacttcccgcgcgcgaatcgacagtcttgagactgcgcttcggc
atcggcgtgccggacgcatactcgctgcgcgaaatcggccggcagctcaacttgtccgcc
gagcgagtgcgccagatcgaggcaaaggccattgagcgcctgcggggctcgccgcagtcc
gagccattgcgaactttcacgaacgttcgccactga
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integrated database retrieval system
