Trinickia violacea: FAZ95_14205
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Entry
FAZ95_14205 CDS
T09503
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tvl
Trinickia violacea
Pathway
tvl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FAZ95_14205 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvl03021
]
FAZ95_14205 (rpoD)
Transcription machinery [BR:
tvl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FAZ95_14205 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Exonuc_VII_L
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QCP50231
UniProt:
A0A4P8IQ04
LinkDB
All DBs
Position
1:3115328..3117358
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AA seq
676 aa
AA seq
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MLAPIVGQPLEENVLANPDREDSAPRAVAVASKAGRRVPKGKTLSVETPLDVVSIALRDE
ERQRQMRALIALGRERGYLTHADINDHLPDNFTQTAAMETIVSTFGDMGVAVYEQAPDAE
TLLLNDAAPAIASDDQADEEAEAALSTVDSEFGRTTDPVRMYMREMGVRELLTRAGEVEI
AVRIEDSLQDMIQAIAACPSIVSAILADVDRIVAGELRIDELVDGVSGDADGSEMTQESE
EDDVDAHASDDDPDGDDTKTDAEDSEKASAARLEQLRIHSLAIFARVRALFEQLPDVLVT
GKSRSAAVAQVRSEIQRELAPIRFTAKTINRMCASVQEQVIQVRAIERSILHIVVDRCGM
PREVFIESFPGNETDLEWTRRMAAASKPFGAALERQLPAIQAEQQKLIDLQAKFSLPLQQ
LKQFNRQMSAAELEMRQAKREMIEANLRLVISIAKKYMNRGMQFLDLIQEGNIGLMKAVD
KFEYRRGWKFSTYATWWVRQAVSRALADQARTIRVPVHMIDAINKLHRISREILQQTGEE
AHPAVLAGRMKMSEEKVRSILKIARQPISLETPVGDDGDATLGDMIEDASAISPTEAANH
ANMRAAIDEALGALSPREAKVLRMRFGLDTTADHTLEEVGKQFDVSRERIRQIESKAMRK
LAHPSCANKLRPFLER
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgccgatcgtcggccaacctctcgaggagaatgtattggcaaatcctgatcgg
gaggattccgcgccccgcgccgttgcagtggcatcaaaagctggtcgccgagtcccaaag
ggaaaaaccttgtccgtcgaaacaccgctggacgtggtgtcgatcgcgctccgggacgag
gagcgtcaacgccagatgcgcgcgctgatcgcgcttggccgtgagcggggctacctcaca
catgcggacatcaacgaccacctgcccgacaactttacgcaaacggctgcgatggagacg
atcgtcagcacgttcggcgacatgggcgtggcagtgtacgagcaggcgcctgacgccgag
acgctcctgttgaacgacgctgctcctgccatcgcttcagacgatcaggcggacgaggaa
gccgaagctgcgctgtcaacggtcgattcggaattcggccgcaccacggatccggtccgg
atgtacatgcgtgaaatgggcgtcagagaactgctgacccgcgccggcgaagtcgagatc
gcggtacgcatcgaagacagcttgcaggacatgattcaggcgatcgccgcgtgcccgtcg
atcgtgtccgcgattcttgccgatgtggaccgcatcgtcgccggcgaactgcgaatcgac
gaactggtcgatggcgtcagcggggacgccgacggaagcgaaatgacgcaggagtcggaa
gaagatgacgtggatgcacacgcctccgacgatgatccggacggtgacgacactaaaacg
gacgctgaggactcggagaaggcgagcgcagcccgcctcgaacagctcaggatccacagt
cttgcgatctttgcgcgcgtgcgcgctctgttcgagcagttgccggatgttctcgttact
ggaaaatcccgttccgcggcggttgcgcaagtgcgctcggagatacagcgtgaactggcg
ccgatccgctttacggccaaaaccatcaaccgcatgtgcgcaagtgtgcaggaacaggtg
attcaggttcgtgcgatcgagcgcagcatcctgcacatcgtcgtcgaccggtgcggcatg
ccgcgcgaggtgtttatcgagtcgtttccgggcaatgagaccgaccttgaatggacccgc
cgtatggcggcggcttcgaagccgtttggcgcggcactcgagcgacaattgccggcgatt
caggccgagcagcagaagctcatcgaccttcaagccaagttctcgctgccgctccagcaa
ctcaagcagttcaaccgccagatgagcgccgcggagttggaaatgcggcaggccaagcgg
gagatgatcgaggcgaatcttcgtctcgtcatttcaattgccaagaaatacatgaaccgc
ggcatgcagttcctcgatctgatccaggaaggcaatatcggcctgatgaaggcggtggac
aaattcgaataccggcgcggctggaagttctcgacgtacgccacatggtgggtccggcag
gccgtctcgcgcgcgcttgccgatcaggcgcggaccattcgtgtgccggtgcatatgatc
gatgcgatcaacaagttgcaccggatttcgcgcgaaatcctgcagcagacgggagaggag
gcgcatcctgcggttctcgcggggcgcatgaagatgtccgaggaaaaggtgcgcagcatc
ctcaagatcgccaggcaacccatctcgctcgagacccctgtgggcgacgatggcgacgcg
acactcggtgacatgatcgaggatgcctctgcaatttcaccgacagaggccgccaaccac
gcgaacatgcgcgccgcgatcgatgaagcgctcggcgcgctgtcgccgcgcgaggccaaa
gtcctgcggatgagattcgggctcgatacgaccgccgaccatacgcttgaagaggtcggc
aagcagttcgacgtcagccgcgagcggatccgccaaatcgagagcaaggcgatgcgcaaa
ctggcgcatcccagctgcgcaaacaagttgagacccttcctcgagcgctga
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