Trinickia violacea: FAZ95_15785
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Entry
FAZ95_15785 CDS
T09503
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tvl
Trinickia violacea
Pathway
tvl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ95_15785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvl03019
]
FAZ95_15785
03009 Ribosome biogenesis [BR:
tvl03009
]
FAZ95_15785
Enzymes [BR:
tvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FAZ95_15785
Messenger RNA biogenesis [BR:
tvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAZ95_15785
Ribosome biogenesis [BR:
tvl03009
]
Prokaryotic type
rRNA processing factors
FAZ95_15785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QCP50486
UniProt:
A0A4P8IQ99
LinkDB
All DBs
Position
1:3451238..3454405
Genome browser
AA seq
1055 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMSQLQLPDGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGTAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDEPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPAS
PAPSAPVKPAAAATPAPAPVTPAGGGFIGWLKNLFGMAPAAPAPEPVVEQPARPARERAE
RTGERGGDRNRNRRGGQGSREGAAARGDSAIGGRQAQPSQRRDEQKEQREGREGRGGRDQ
REQQREGREPREGREAREPRESREGRERTQERAERAERGEAVEAAARGGERQERGERRER
GERPERVERGERRKPQQEVAAEAAARSEALAAEAAATATASVDESGAPFDQEGAARDGEE
RRRRRRGRRGGRREREEEGVNVTHAADIAEAEGAVAAVPAVAVEHAHAVEPVAAPRETAV
SAPVEAVAAPEVVVTPVEAPTPVVTELAEPVAQHVETAAAPAAHEVAPVAAHAEPVVASP
QVETQQPAAAPVFAPVVSAAPVEEPAPAVAAEVAAPVAEAQPASVAQPVEPIAEAAPVAH
VAPVEAAAPVETQPAPQAAVAQAQAPRANGLSSADLQPMLESAGLVWVNTDADKLRNAQE
AAAQTVKAVRVPRERKSLPPVDTTPMQQVETMKHD
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
ggacagaagctcatcgacatcgatatcgagactgccggccgcgaacagcgcaaaggcaac
atctacaaggggatcgtcacgcgcatcgagccgtcgctcgaagcctgtttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcagggac
ggcgtcgacatgcgctccgcgcgcattcaggacgccctgcgcgaaggtcaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggggcggcgctcaccacgttcatctcg
ctcgccggccgctatctggtgctgatgccgaacaatccgcgtggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgccaggaactgcgcgagacgatgtcgcagcttcaattgccg
gacggcatgagcatcatcgcgcgcacggccggcatcggccgttccgccgaagagctgcag
tgggacctgaactacctgatgcaactgtggcgcgcgatcgaagccgcgtcgcaaagcggc
acggccggccagccgatgctgatctatctcgaatcgagcctcgtcatccgcgcgattcgc
gactacttccagccggatatcggcgaaatcctcatcgacaccactgaaatccatgatcag
gcgcgcgccttcatggacatcgtgatgccggacaacgtcagcaaggtcaagcgctaccac
gacgacgttcccctcttctcgcgcttccagatcgagcaccagatcgagacggcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcacgcgccaccaagggcgccgacatcgaggaaacggccgcg
cgcacgaacctcgaagccgccgacgaagtcgcccgccaactgcgcttgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
caacgcctgaaggatgcgctcaagcacgaccgtgcgcgcgtccagatgggcaagatctcg
cgcttcggactgatggagctgtcgcgtcagcgtctgcgtccggcgctgtccgagggcagc
cacgtcacctgcccgcgctgcaacggcaccggccatattcgggatacggaatcgtccgcg
ctgcaagtgctgcggatcattcaagaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtgttgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgtctgcgtcacgacgatgcgcgcctcgacgagccgcgcgcc
tcgtggaagatggccgaggaagccgcccgcgaactcgagtcggaaaccggctacagcaag
cgcaccgaagaggtgaagccgaagcaggaagcggcggtcaagggcatcacgccggcctcg
ccggcgccgagcgcgcccgtgaagccggctgcggccgccacgccggcgcccgccccggtc
accccggcaggcggcggtttcatcggctggctcaagaatctgttcgggatggcgccggct
gcgcccgcgccggaaccggtggtcgagcagcccgcgcgtccggcgcgtgagcgcgctgag
cgcaccggcgaacgcggcggcgatcgcaaccgcaaccgccgtggcggccaaggctcccgc
gaaggcgctgccgcgcgcggcgacagcgcgatcggcggccgtcaggctcagccgtcgcag
cgtcgcgacgaacagaaggaacaacgcgaaggccgcgaaggccgcggtggccgcgatcaa
cgcgagcagcaacgcgaaggccgtgagccacgcgagggtcgtgaagcacgcgagccgcgc
gaaagccgcgagggccgcgaacgtacgcaagagcgcgcagaacgcgccgagcgcggcgag
gcagtagaagccgcggcgcgcggcggcgagcgtcaggaacgcggcgagcgccgtgagcgt
ggcgagcgtccggagcgcgtggaacgcggcgagcgccgcaagccgcagcaggaagtcgcc
gccgaagcagcggctcgcagcgaagcacttgcagccgaagcggcagcaacggctacggct
agcgtcgacgaaagcggcgcaccgtttgatcaagaaggagcagcacgcgacggcgaggaa
cgccgccggcgccgccgcggccgtcgtggcggccgtcgcgagcgcgaggaagaaggcgtc
aacgtgacgcacgctgccgacatcgcggaagccgaaggcgcggtcgctgctgtgccggcc
gtggctgtcgagcatgcgcacgctgtcgaacccgtcgctgcgccgcgcgaaacagcggta
tcggctccggtcgaagcggttgcggcgcccgaggtagtcgtcacgcctgtcgaggctccg
acaccggtagtgaccgagctggccgagccggtggcgcagcacgtcgagacggcggcagcg
cccgccgcgcatgaggtcgctccggtagccgcgcacgccgagccggtcgttgcctcgccg
caagtcgaaacgcagcagcctgccgccgccccggtcttcgcaccggtcgtgtcggcagcg
ccggtcgaagaacccgcgccggcggttgccgccgaggtcgcggcacccgtcgcggaagcc
cagccggcgagcgtcgctcaaccggtcgagccgatcgccgaggcagcgccggtcgcgcac
gtcgcgccggtagaagcagcggcgccggtcgaaacgcagccggctccgcaagccgccgtc
gcacaggcgcaagcgccgcgagcaaacggcttgtcgtccgccgacttgcagccgatgctg
gaatcggccggcctcgtctgggtcaacaccgacgccgacaagctccgcaatgcccaggaa
gcggccgcgcaaacggtgaaggccgtccgcgtgccgcgcgagcgcaagtcgctgccgccg
gtggacaccacaccgatgcagcaagtggaaacgatgaagcacgactaa
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