Trinickia violacea: FAZ95_16045
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Entry
FAZ95_16045 CDS
T09503
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
tvl
Trinickia violacea
Pathway
tvl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
FAZ95_16045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvl03019
]
FAZ95_16045
03009 Ribosome biogenesis [BR:
tvl03009
]
FAZ95_16045
Messenger RNA biogenesis [BR:
tvl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAZ95_16045
Ribosome biogenesis [BR:
tvl03009
]
Eukaryotic type
Pre-60S particles
RNases
FAZ95_16045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QCP50533
UniProt:
A0A4P8IT92
LinkDB
All DBs
Position
1:complement(3506953..3507570)
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AA seq
205 aa
AA seq
DB search
MTDILESVGEPTLVRSEMNLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDVAVEGPVLAI
HQSDETLGKMDEWNKNTHGRSGLIERVRASTVTEDDAAEQIRAFLGAYVPPGKSPMCGNS
ICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
DELKYYREHFLIPAASAPSEPSEGA
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgactgacattctcgaatccgtcggcgagccgacgctcgttcgcagcgagatgaacctc
gtctggctcgacatggaaatgacgggtctcgagcccgacaccgaccgcatcatcgagatc
gccgtggtcgtgaccaattcgacgctcgacgtggccgtcgaaggcccggtgctggccatc
caccagagcgacgaaacgctcggcaagatggacgagtggaacaagaacacgcacggccgc
tcgggcctgatcgagcgcgtgcgcgcatccacggtgaccgaggacgatgcggccgagcag
atccgcgcgtttctcggagcgtacgtgccgcccggcaagtcgccgatgtgcggcaattcg
atttgccaggaccgccgcttcatggcgcgctggatgccggaactcgagcgcttctttcac
tatcgcaacctcgacgtgagcacgctcaaggaactctgccgccgctggcagccggcgatc
tacaagggttttcagaagcgggcgatgcataccgcgctcgccgatatccacgagtcgatc
gacgaactcaagtattaccgcgagcactttttgattccggcagcgagtgcgccgagcgag
ccgtctgaaggcgcgtaa
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