Trinickia violacea: FAZ95_19030
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Entry
FAZ95_19030 CDS
T09503
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tvl
Trinickia violacea
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tvl03016
]
FAZ95_19030
Enzymes [BR:
tvl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAZ95_19030
Transfer RNA biogenesis [BR:
tvl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FAZ95_19030
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QCP51058
UniProt:
A0A4P8IPS0
LinkDB
All DBs
Position
1:complement(4172359..4174464)
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AA seq
701 aa
AA seq
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MNVFFEESGSFKAGSVLSKQGDAFQVELPGGRRAKVRAKDVLIEFEKPSAAELMQQADEA
AQQIDLDFLWECAPADEFPFATLASDYYGESYGPIERAALVLRMHGAPVYFRRKGRGQYQ
RAPEEQLKMALASLERKRQQALVQAEYEAELTAGRLPAAFDGKALSLLTKPDKNSIEYKA
LEAAAAARGISMARLMLECGGVASARALHEARFLAEFFPHGTGFPSVTPGALPDDLPTAD
VEAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGIARGDTVDAIARGRLSTVYM
PGDKITMLPDEVVDAFTLKEGGLRPALSLYIIVDRTTQEIVANETRAELVFVKNNLRHNT
LDALVTEETLAEGSGDYPHKDDIAVLWPLAQALFEKRQQARAGYGLKREVQSNTDYNFYV
DGEHVTITPRRRGSPLDMIVAELAILANSTWGAFLHDHGVPGIYRSQRAFAASGPKRTRM
QTTAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVNHGVAAKLVAPFKPKDADLYAV
VQGFDDTYSAYADHQRRMEYFWCLRWITQEGRKQVVASVVKGDLVRLDEVPLLLHVPGLG
VHARGTKVMLEVMSVDELTVEASVRPLHVVDAPAVTSGAGAEEDEDEVEELIDAADESAE
SEAEAQAEADAGAGAEEGAADGDASTPGTEPGPNPAAHATE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttctttgaggaatcgggcagtttcaaggcgggcagcgtgctgtcgaagcaa
ggcgacgcgtttcaggtcgagttgccgggcggccggcgcgcgaaagtccgcgccaaggac
gtgctgatcgaattcgagaagccgagcgccgccgagttgatgcagcaggcagacgaagcc
gcgcagcagatcgatctcgacttcctgtgggaatgcgcgcccgccgacgaattcccgttc
gcgacgctcgcgagcgactattacggcgagtcgtacggcccgatcgagcgtgcggcgctc
gtgttgcgcatgcacggcgcgccggtctacttccgccgcaaggggcgcggccagtatcag
cgcgcgcctgaagagcagctgaagatggcgttggcgtcgctcgagcgcaagcgccagcag
gcgctcgtgcaggccgaatacgaagcggagctgacggcgggacgtctgcctgccgcattc
gacggcaaggcgctgtcgctcttgaccaaaccggacaagaattccatcgaatacaaggcg
ctcgaagcggccgccgcggcgcgcgggatttccatggcgcgcctgatgctcgaatgcggc
ggcgtcgcgtcggcgcgcgcgctgcacgaggcgcgctttctggccgagttcttcccgcac
ggcaccggctttccgtccgtcacgccgggggccttgccggacgacttgccgaccgccgac
gtcgaagcgttctcgatcgacgacgtcacgacgaccgaaatcgacgatgcgttttccgtc
gagcacctggccgacggccgcgtgcggatcggcgttcacatcgcggcgccggcgctcggc
atcgcgcgcggcgatacggtcgatgcgatcgctcgcgggcggctgtccaccgtctacatg
ccgggcgacaagatcacgatgctgcccgacgaagtcgtcgacgcattcacgctgaaggaa
ggcggcctgcgcccggcgctgtcgctctacatcatcgtcgatcgcacgacgcaggagatc
gtcgcgaacgaaacgcgcgccgagctcgtgttcgtgaagaacaacctgcgccacaacacg
ctcgatgccctcgtgaccgaagagacgctggccgaaggcagcggcgactatccgcacaag
gacgacatcgccgtgctgtggccgctcgcgcaggcgctcttcgaaaagcgtcagcaggcg
cgcgcgggctacggcttgaagcgcgaagtgcagagcaataccgattacaacttctacgtc
gacggcgagcacgtgacgatcacgccgcgccgccgcggctcgccgctcgacatgatcgtc
gcggaactcgcgatcctcgcgaactcgacgtggggcgcgttcctgcacgaccacggcgta
cccggaatctaccgttcgcagcgcgcgttcgcggcatccggtccgaagcgcacgcggatg
cagacgacggctgcgccgcacgagggtctcggcgtcgcgcaatatgcgtggagcacctcg
ccgctgcgccgctacgtcgacctcgtcaaccaatggcagttgctcgcgtgcgtgaatcac
ggcgtggcggccaagctcgtcgcgccgttcaagccgaaggacgccgatctctacgcggtc
gtccagggcttcgacgacacctatagcgcctacgccgatcatcagcggcgcatggagtac
ttctggtgtctgcgctggatcacacaggaaggcaggaagcaggtggtcgcgtcggtggtg
aagggcgacctcgtgcgtctcgacgaagtgccgctgttgctgcacgtgccgggtctcggt
gtccacgcgcgcgggacgaaggtgatgctcgaagtgatgtcggtcgatgaactgacggtc
gaggcatcggtgcgtccgctgcacgtggtcgatgcgccggccgtgacgagcggcgccggg
gccgaagaggacgaggacgaagtcgaagagctgatcgacgccgccgacgagtccgccgaa
agcgaagccgaggcgcaggccgaagccgatgcgggcgccggcgcggaggagggggccgcg
gacggcgatgcctccaccccgggcaccgagcccggcccgaaccccgccgcccacgccacg
gagtaa
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