Trinickia violacea: FAZ95_20230
Help
Entry
FAZ95_20230 CDS
T09503
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tvl
Trinickia violacea
Pathway
tvl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FAZ95_20230 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvl03021
]
FAZ95_20230 (rpoB)
03400 DNA repair and recombination proteins [BR:
tvl03400
]
FAZ95_20230 (rpoB)
Enzymes [BR:
tvl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FAZ95_20230 (rpoB)
Transcription machinery [BR:
tvl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FAZ95_20230 (rpoB)
DNA repair and recombination proteins [BR:
tvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FAZ95_20230 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
BSH_YknX
UbiD
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
QCP51279
UniProt:
A0A4P8IZB5
LinkDB
All DBs
Position
1:complement(4412941..4417047)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKNFAKRPIVHQVPFLLATQLESFSTFLQADVPAAQRKPEGLQAAFTSV
FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFALMPE
GAQMEFVPERLRGEVARFDISDRDGNVIVTKDKRINAKHIRDLENAKTKFISVPEDYLIG
RVLAKNVVDGDTGEVIANANEEIGESTLEKLREAKIKDIQTLYTNDLDQGPYISSTLRID
ETADRTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
TDGKVTDQIDYLSAIEEGRYVIAQANAAVADDGTLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVG
DKVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLEDLDHYHWFDIR
LADEEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYVAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLQRQAKIAELREFLTKIYNESGRAEELDGFSDDEIVELAKNLREGVPFAT
PVFDGATEEEMSRALDLAFPDDIAKQLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgtattcgcaagaactttgcgaagcgccccatc
gttcaccaagtacctttcctgctggctacccagcttgaatcattcagcacgtttctgcaa
gcggatgtgcctgcggctcaacgcaaacccgagggtttgcaggctgcgttcacgtctgtt
ttcccgattgtttctcacaacggcttcgctcgtctagagttcgtcagctacatgttgtcg
ccgccggcattcaatatcaaggaatgtcagcagcgcggtctcacgtactgttcggcgctg
cgcgcaaaagtgcgtctggtgctgctcgacaaggaatcgccgagcaagcccgtcgtgaag
gaagtgaaggagcaggaagtgtacatgggcgaaattccgctcatgacgccgaccggctcg
ttcgtcatcaacggcactgagcgcgtgatcgtttcgcagctgcaccgctcgccgggcgtg
ttcttcgagcacgacaagggcaagacccacagctcgggcaagctgctgttctccgcgcgg
atcattccttaccgcggctcgtggctcgacttcgaattcgacccgaaggacgtgctgtac
ttccgcgtcgaccgtcgccgcaagatgccggtcacgattctgctgaaggcgatcggcctg
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcgcgctgatgcccgaa
ggcgcacaaatggaatttgtgcccgagcgtctgcgcggtgaagtcgcgcgtttcgacatc
tcggatcgcgacggcaacgtcatcgtcacgaaggacaagcggatcaacgcgaagcatatc
cgcgacctcgaaaacgcgaagacgaaattcatttcggtccccgaagattatctgatcggg
cgcgtgctggcgaagaacgtcgtcgacggcgataccggtgaagtgatcgcgaacgcgaac
gaagaaatcggcgaaagcacgctcgaaaagctgcgcgaagcgaagatcaaggacatccag
acgctctacacgaacgatctggaccaaggtccgtacatctcatcgacgctgcgcatcgac
gaaaccgccgaccggacggccgcgcgcattgcgatctaccgcatgatgcgtccgggcgaa
ccgccgaccgaagaggcggtcgaggcgctgttcaatcgtctgttctacagcgaagacgcg
tacgacctgtcgaaggtcggccgtatgaagttcaaccgccgtgtcggccgcgatgaaatc
gtcggcccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgatatcgaccacttgggcaatcgtcgcgtgcgt
tgcgtcggcgaactggcggaaaaccagttccgcgccggtctcgtgcgtgtcgagcgcgcg
gtcaaggaacgcctcggccaagccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgattcgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacccacaagcgccgtgtttcggctcttggc
ccgggcggtctgacgcgcgagcgcgcgggcttcgaagtccgcgacgtgcacccgacccac
tacggccgcgtgtgcccgattgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctcgcgctgtacgcgcacctgaacgagtacggcttcctcgaaacgccgtaccgcaaggtg
acggacggcaaggtgaccgaccagatcgactatctgtctgcgatcgaagaaggccgttac
gtgatcgctcaggcgaacgcggcggtggccgacgacggcacgctgaccgacgaactcgtg
tcgtcgcgcgaagccggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtgtcggtggcggcatcgctgattccgttcctcgagcacgat
gacgcgaaccgtgcattgatgggctcgaacatgcagcgccaggctgtgccgtgtctgcgt
cctgagaaggccgtggtcggtacgggtatcgagcgcacggtggcggtcgactcgggcacg
acggttcaggcgttccgcggtggcgtggtcgactacgtcgacgcaggccgtatcgtgatt
cgcgtgaacgacgacgaagcggtggcgggtgaagtcggtgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgcccgatcgtgaaggtcggc
gacaaggttgcgcgcggcgacgtgctggctgacggcgcctcgacggacctgggcgagctc
gcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatctcggagaaggtggttgcggacgatcgctacacgtcgatccacatcgaa
gagctgaacgttgtcgctcgcgacacgaagctcggaccggaagaaatcacgcgcgacatt
tcgaacctcgcggaagtgcagcttggccgtctcgacgagtcgggcatcgtgtacatcggc
gcggaagtcgaggcgggcgacgtgctggtcggcaaggtcacgccgaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcatcggacgtgaag
gatacgtcgctgcgcgtgccgtcgggcatgagcggcacggtcatcgacgtgcaggtgttc
acgcgtgaaggcatccagcgcgacaagcgtgcccaacagatcatcgacgatgaactgaag
cgctatcgcctcgacctgaacgaccagctgcgtatcgtggaaggcgatgcattccagcgt
ctcgcgcgcatgctcgacggcaaggtcgcaaacggcggtccgaagaagctcgcgaagggc
acgaagatcgaacaggcttacctggaagatctcgaccactaccactggttcgacatccgc
ctcgcggacgaagaagcagcggcacagctcgaagcgatcaagaactcgatcgaagagaag
cgtcaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacgtcgcggtgaagcgccgtctgcag
cctggcgacaagatggcaggccgtcacggtaacaagggcgtggtgtcgaagatcgttccg
atcgaagacatgccgtacatggccgacggccgtccggcagacgtcgtgctgaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcaggtgctcgaagtgcacctgggctgggctgct
aagggcctcggctggcggatcggcgaaatgctgcagcgtcaggcgaagatcgccgagctg
cgcgagttcctgacgaagatctacaacgagtcgggccgcgcggaagagctggacggcttc
agcgacgacgagatcgtcgagctggcgaagaacctgcgcgaaggcgtgccgttcgcgacg
ccggtgttcgacggtgcgacggaagaagaaatgtcgcgcgcgctggatctggcgttcccg
gacgatatcgcgaagcaactcggcatgacgccgtcaaagaaccaggtgcgtctgtacgac
ggtcgcacgggcgagatgttcgagcgtacggtcacggtcggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgacgggcccgtactcgctcgtg
acgcagcagccgttgggcggcaaggcgcagttcggcggccagcgcttcggtgagatggaa
gtgtgggcgctcgaggcgtatggcgcgtcgtacgtgctgcaagaaatgctgacggtcaag
tcggatgacgtgacgggccggaccaaggtttatgaaaacctggtcaagggcgatcacgtg
atcgatgcaggcatgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctcggt
atcgatatcgatctcgaccgcaactaa
DBGET
integrated database retrieval system
