Trinickia violacea: FAZ95_37355
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Entry
FAZ95_37355 CDS
T09503
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tvl
Trinickia violacea
Pathway
tvl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tvl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FAZ95_37355 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvl03021
]
FAZ95_37355 (rpoD)
Transcription machinery [BR:
tvl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FAZ95_37355 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UTP20
Motif
Other DBs
NCBI-ProteinID:
QCP54549
UniProt:
A0A4P8J6A4
LinkDB
All DBs
Position
2:complement(3385106..3387547)
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AA seq
813 aa
AA seq
DB search
MAKTTGVTAGGKKAADKGTVGSMEPTNKVTKARSATSSARRSPVASVASPATKKSSTAPA
ARAAPATVAKAAKATRTAPKPEVKPSAKRASLKSVRGAAAMPDDSAASDTPVSTVQTAEV
QQPRVETIAGTANSMTKKLNEVSVDDDATQGEEQQAAPGKGEKAKARDRRAKEKALLKDA
FASTQPGTAEELEERRSKLRALIKLGKERGFLTYAEINDHLPDNFAETEAIEGIISTFND
MGVAVYEQAPDAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMG
TVELLTREGEIEIAKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLI
DPNAEDTDGFSAQEAEAIESEAEDAEEEEEEEEEEDDGTAQATANAAQLEALKRTSLEKF
ALISEWFDKMRRAFEKEGYKSKAYLKAQETIQEELMSIRFTARTVERLCDTLRAQVDEVR
QVERQILHTVVDKCGMPRAEFIARFPGNETDLDWSEKIVGESHSYSAILSRNIPAIREQQ
QRLLDLQARVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
KMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGD
FIEDTNTVAPSDAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFD
VTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagacgacaggcgtaactgcgggtgggaaaaaagcggcggacaaaggcacagtg
ggctcaatggagccgaccaataaggtcacaaaggccaggtccgcaacttcttccgccagg
agatcgcccgttgccagcgtagcgagccctgcgacgaaaaagtcctcgaccgcgccggca
gcacgagcggcccctgcaacggtggccaaggccgccaaagcaacgaggacggccccgaag
ccggaggtgaaaccctctgcgaagcgggcgagtttgaaaagcgtaaggggcgcggctgcc
atgccggacgattcggcagccagcgacactccagtatccacggttcaaacggctgaagtc
cagcagccgcgagtcgagactattgccggtacggcgaactccatgacgaaaaagctgaac
gaagtatccgtcgatgacgacgcaacccagggcgaagagcagcaagccgctccgggcaaa
ggcgaaaaggccaaggcacgcgatcgtcgcgcgaaggaaaaagcgctcctgaaggacgct
tttgcgtcgacgcagccgggcacggccgaggaactcgaagagcgccgctcgaagctgcgc
gcgctcatcaagctcggcaaggagcgcgggttcctcacgtacgcggaaatcaacgaccac
ctccccgataacttcgcggagaccgaagcgatcgaaggcatcatcagcacgttcaacgac
atgggcgtggcggtctacgaacaggcccccgatgccgaaacgctgctcctgaacgacaac
gcgcccgccgcgtcgtcggacgatgaagtcgaagaggaagccgaagtcgcgctgtcgacg
gtcgattccgaattcggccgcaccaccgatcccgtccgcatgtacatgcgtgaaatgggc
acggtcgagctgctcacgcgcgaaggcgaaatcgaaatcgcgaagcgcatcgaagacggc
ttgaagcacatggtgatggccatctccgcgtgcccgaccacgatcgccgacatccttgcg
atggccgagcgtgttgcgaacgaggaaatccgcatcgatgaactcgtcgacggcctgatc
gatccgaacgccgaagataccgacggcttctcggctcaggaagccgaagcgatcgagagc
gaagcagaggacgccgaagaggaggaagaggaagaagaggaggaggacgacggcaccgcg
caagcgacggccaacgccgctcaactcgaagccttgaagcggacgtcgctcgagaagttc
gcgctcatcagcgagtggttcgacaagatgcgccgcgcgttcgagaaggaaggctacaag
tcgaaggcttacctgaaggcgcaagagacgattcaggaagagctgatgtcgatccgcttc
accgcgcgtaccgtcgagcgcctgtgcgatacgctgcgcgcgcaagtggacgaagtgcgt
caggtcgagcgtcagatcctgcatacggtggtcgacaagtgcggcatgccgcgtgcggaa
ttcatcgcgcgtttcccgggcaacgaaacggatctcgactggtcggaaaagatcgtcggc
gagagccattcgtatagcgcgatcctgtcgcgcaacattccggcgatccgcgaacagcag
caacgcctgctcgatctgcaggcgcgtgtcgtgctgccgctcaaggacctgaaggaaacc
aatcgccagatggccgccggcgagctgaaggcgcgtcaggcgaagcgcgagatgaccgag
gcgaacctgcgtctcgtgatctcgatcgcgaagaagtacacgaaccgcggtctgcagttc
ctcgatctgatccaggaaggcaacatcggtctgatgaaggcggtggacaagttcgaatat
cgccgcggctacaagttctcgacgtatgcgacgtggtggatccgtcaggccatcacgcgt
tcgatcgcggaccaggcgcgcacgatccggattccggttcacatgatcgaaacgatcaac
aagatgaaccgcatctcgcgtcagatcctgcaggaaaccggtctcgagccggatccggca
acgctcgccgaaaagatggagatgccggaagacaagatccgcaagatcatgaagatcgcg
aaggagccgatctcgatggaaacgccgatcggcgacgacgacgattcccatctgggcgac
ttcatcgaggatacgaacacggttgcgccgtcggatgccgcgttgcacgcgagcatgcgc
gatgtcgtgaaggacgtgcttgattcgctgacgccgcgtgaagcgaaggtgctgcgcatg
cgcttcggcatcgagatgagcaccgatcacacgctcgaggaagtcggcaagcagttcgac
gtgacgcgtgagcggattcgccagatcgaagcgaaggcgctgcgcaagctgcgtcacccg
agccgctcggacaagctcaagtcgttcctcgaaggcaattga
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