Thermostichus vulcanus: NIES2134_103140
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Entry
NIES2134_103140 CDS
T05980
Symbol
sigC
Name
(GenBank) group 2 RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
tvn
Thermostichus vulcanus
Brite
KEGG Orthology (KO) [BR:
tvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvn03021
]
NIES2134_103140 (sigC)
Transcription machinery [BR:
tvn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIES2134_103140 (sigC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Rv2175c_wHTH
HTH_IclR
TnsD
OsmC
Motif
Other DBs
NCBI-ProteinID:
BAY52084
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All DBs
Position
319523..320635
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AA seq
370 aa
AA seq
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MVAIPIQPLSERPLTTDLVRQYLQEIGRVPLLTPSEELRLAEQVQQYQALLAVRDQSDDP
QLKRYVAAVRERDRLRPLLGRPLSRAQWAAGLKMSVAELQTCVQAGRQAWAKAANITLSE
LQHIERQGQRAKTQLLQANLRLVVNIAKKYQHHGVEFLDLIQEGSLGLERAVEKFDPTKG
FRFSTYAYWWIRQSITRAVASQSRTIRLPIHMVEKLNKIKRAQRRLAAQRGAMPSLADIA
QELNLEVSQVRQVLMAVPKSVALEQRVGSDQETELQELIESPAPTPDEVIMRESLRTTLK
QLLSDLSPRERQVMELRYGLGEQPALELAEVAVLLGLSRERIRQIEHRALQKLRQPQRRR
EIQDYLEEFA
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggtggctatccccattcaacccttgtccgagcgtccattgacaacggatttagtacgg
cagtatttgcaggaaattggccgtgtgcccttgctcacccctagcgaagaactgcgcctt
gccgaacaggttcagcagtaccaagccctgcttgcagtgcgagatcagtcggatgatccc
cagctcaaacgctacgtggcggctgttagggagcgcgatcgcctgcggccgctgttgggg
cgtcccctgagccgtgcccaatgggctgcaggactcaaaatgagtgtggctgaattgcaa
acctgtgtgcaggcggggcgtcaagcttgggcaaaggcagcgaatattaccctcagtgaa
cttcagcacattgagcgtcaaggacagcgggcaaaaacccaactgctgcaagctaacctg
cgcttggtggtgaacattgccaaaaaatatcaacatcacggcgtggaatttttagatttg
atccaagaggggagtttgggtctagaacgtgccgttgaaaaattcgatccgaccaaggga
tttcgctttagcacctatgcctattggtggattcgccaaagtatcacccgtgccgttgct
agccaaagccgtacaatccgcctacccattcacatggtggaaaagctcaataaaattaag
cgtgcccaacggcgtcttgcggctcaacggggagcgatgcccagtctagcggacattgcc
caagaactgaatcttgaggtgtcgcaggtacggcaggtgctgatggccgttcccaaatcc
gtggccctagaacagcgggttggttccgaccaagaaacggagttgcaggagttgattgaa
tcccctgcccctacccccgatgaggtgatcatgcgcgaatccctacggaccactttgaag
caactgctgagtgatctatccccccgtgagcgccaagtgatggaactgcgttatggccta
ggggaacagccggcccttgagctggcggaagttgcggtactgctgggactgagtcgggag
cggattcgccaaattgagcaccgcgccctgcaaaaattgcggcaaccccaacggcggcgg
gaaattcaagactatctggaggagtttgcctag
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