Thermostichus vulcanus: NIES2134_104570
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Entry
NIES2134_104570 CDS
T05980
Symbol
recJ
Name
(GenBank) single-strand-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tvn
Thermostichus vulcanus
Pathway
tvn03410
Base excision repair
tvn03430
Mismatch repair
tvn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES2134_104570 (recJ)
03430 Mismatch repair
NIES2134_104570 (recJ)
03440 Homologous recombination
NIES2134_104570 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tvn03400
]
NIES2134_104570 (recJ)
DNA repair and recombination proteins [BR:
tvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES2134_104570 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES2134_104570 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES2134_104570 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
BAY51946
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All DBs
Position
462175..464433
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AA seq
752 aa
AA seq
DB search
MQRPWQIYSADPAPRDFIEAVKQLHPEAGAITAQLLWQRGYRDSLRQVPPFLDWRYYESA
SPLEFPEMSAALGRLQQALDQQEKVAIWGDFDTDGVTATAVLWEGLKPLLGTQLVDFYIP
NRHHDSHGLSPHGLQQLQQKGVALIITCDTGSTNGPEIVLARQLGMDVIVTDHHTLDPTP
LGAVALINPRQLPWDHPLRHLSGVGVAYKFLEAVYDRWPEKTQGYPLENLLDLVAIGLIA
DWVELRGECRYLAQRGLDQLGKRQTLRPGIAALLGHVSKHRAWQREISFTVAPRLNAVSR
VEGDVRPLITLLTTQDRHEARQLAERIATLNTERQRRQKEVTRMAHAKAAQLDLSASRVI
LLTDDNWPLSLLGLVANDIVKTYGRPALLLQTNPETGMAVGSARSDGSVDLYEAFHSQRH
LLEGLGGHPYAVGFRLKMAHIPLLAAALNQFLAQQEGTASATPKPLIIDLEVTLGQLNGQ
LLKELEVLAPFDSTHHPYPRLLVRNVELTQLRDNKLRDNNSHGGRRYVSMVLHDRQHQHT
FPAKWWDHQIGDCPQGACDLVIELEEWQGSLSAVIKELRPSETNVIQEASFQPLMDYRDR
PPAASVKGLRVETCPTSRQSWRQWIQRAKREQQPLILAYALPPEQDALKVWREFLTLCQQ
ATQQGKPLEREGLQKRLGIEATTLNYALQVLETLGVKVLSTPEEFWCQWPPQLSSSPPTG
LALERFTAAIAEENFRRRYFAAAPLQALQETY
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcccttggcaaatctattctgctgatcccgccccccgagacttcatcgaggca
gttaagcagctccatcccgaggcaggcgccattacggctcagttactttggcagcgcggc
taccgtgattcccttcggcaagtgcccccttttctagattggcgctactacgagtcagcc
tcccccctagagtttccagagatgtccgctgccctagggcgtttgcaacaggcactcgat
caacaggaaaaagttgcgatttggggagactttgacaccgatggagttacagcgactgcc
gtcctttgggaaggactaaaaccccttttgggaacgcaactggtggatttttatattccc
aatcgccaccacgactcccatggtctttcgccccatggcctccagcagcttcagcaaaaa
ggcgtcgctctaattattacctgcgatacgggctctaccaatggccctgaaattgtcctt
gcccgtcagttggggatggatgtgattgttactgatcaccacacccttgatcccactccc
ttgggggccgtggcgctgatcaatccgcggcagttgccctgggatcatcccctacgtcat
ttatcgggagttggcgtcgcctacaaattcttggaagccgtctatgacagatggccagag
aaaacccaggggtatcccctcgagaatctccttgatctggtggccattggcctaattgct
gattgggttgaattgcgaggagagtgccgctatcttgcccagcgaggcttagaccaactg
ggaaagcgtcagaccctccgacccggaattgctgcccttttggggcacgtgtccaagcat
agggcttggcagcgggagattagttttaccgtcgcccctcgcctcaatgccgtgagtcgt
gtagagggggatgtgcgacccctgattacgctcttgaccacccaagatcggcacgaagcg
cggcagttggcagagcgtatagcaaccctgaatacagaacggcagcgacgccaaaaggag
gtgacgaggatggctcatgccaaagcggctcagttagacctctcagcatcacgggtgatt
ctcctcaccgatgacaattggccattgagtcttttggggctggtggcgaacgatattgtc
aaaacctatggtcgccccgcccttttgctgcagacgaatccagaaacgggaatggcagta
ggttcagcgcgctctgatggctctgtggatctctatgaggcattccatagccaacggcat
ttacttgaggggttgggtgggcatccctatgcagtaggctttaggctgaagatggcgcac
atcccccttttggcagcagccctcaaccaattcttggcacagcaagagggcaccgccagc
gctacaccgaaaccgttaatcattgacctggaagtcaccttgggtcaactcaatgggcaa
ttgctcaaggaactagaagtccttgccccctttgatagcacccaccatccctatccgcga
ttgctggtgcgcaatgtggaactcacccaactgagggataataaactgagggataataac
agtcacggcgggagaaggtatgtctcaatggtactccacgatcgccagcaccagcacacc
tttcctgccaagtggtgggatcatcaaatcggcgattgcccccagggagcctgtgatctc
gtgattgaactagaggagtggcaaggctccctatcagccgtcattaaagagctacgaccc
agtgaaaccaatgtgatccaagaagcgtcttttcagccccttatggattatcgcgatcgc
ccccctgcggcaagcgtcaagggtttgcgcgtagaaacctgccccacctcccggcaaagc
tggcgccaatggattcagcgagcaaagagggaacagcaacccttgattttggcctacgct
cttcccccagagcaggatgccctaaaggtctggcgggaatttctaacgctgtgccaacaa
gccacgcaacagggaaaacccttagaacgagaggggctgcagaaacgcctgggcattgaa
gccaccacactcaactatgccctccaggtgcttgagaccctgggggttaaggttctctct
accccagaggaattttggtgtcaatggccaccacagctcagctcttctccccctacggga
ctggccttagagaggttcacagcagcgatcgccgaggagaatttccgtcgtcgctatttt
gctgctgcccccctccaggcccttcaggaaacctattaa
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