Thermostichus vulcanus: NIES2134_110030
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Entry
NIES2134_110030 CDS
T05980
Symbol
ycf56
Name
(GenBank) hypothetical protein
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
tvn
Thermostichus vulcanus
Brite
KEGG Orthology (KO) [BR:
tvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tvn03016
]
NIES2134_110030 (ycf56)
Enzymes [BR:
tvn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
NIES2134_110030 (ycf56)
Transfer RNA biogenesis [BR:
tvn03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
NIES2134_110030 (ycf56)
Prokaryotic type
NIES2134_110030 (ycf56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_4
HHH_3
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
BAY51409
LinkDB
All DBs
Position
1018756..1019979
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AA seq
407 aa
AA seq
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MEITFLGTSSGVPTRTRNVSSVALRLPQRKEIWLFDCGEATQHQLLRSDLRTSQIRRIFI
THMHGDHIFGLMGLLASCGLAGTVSQIDVYGPPTLDRYIASCLRWSVMRLPYKLQVHTVE
PGEVFSDGEFTVTCRLLHHRVPAFGYRVTEGDRPGRFHVEKAQALGIPFGPLYGQLKQGK
TITLEDGRTFDGRDFCDPPQRGRSMVYCTDTVFCDSAVELAQQADVLIHEATFSHQEANL
AFARLHSTSTMAAQVAAFAQVKLLFLTHFSARYAPGNPVQVEDLLAEAQAIFPNTRLAQD
FLHYAIPRDGQICAEMPPSDSPAAANIDTLEATLEPLEAQTVAADAKNAPAIAINRATRQ
QMQQKLGIDATTANAILERRRQQKFTCLGELERLYPQVDWSALNVLF
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtggaaatcacatttctaggcactagttctggggtgcccacccgcacacgcaatgtttcc
agtgtggctctgcggctgccccagcgcaaggaaatttggctctttgactgcggtgaagcc
acccagcaccaattgctgcgcagcgacctgcgaaccagtcagattcgccggattttcatt
acccacatgcacggcgatcacatctttggcctaatgggcttgctggccagttgtggcctt
gcgggaactgtgagtcaaattgatgtctatggcccaccgaccttggatcgctacattgcc
agttgtttgcgctggtccgtgatgcgacttccctacaagttgcaagtgcatacggtggag
cccggggaagtctttagcgatggcgagtttaccgtgacctgtcggctgctgcatcatcgc
gttcccgcctttggctaccgggtgacggagggcgatcgccccggtcggtttcatgtggaa
aaagcccaagccctggggattccctttggccccctgtatggtcaactcaagcagggaaaa
accatcactttagaggatggccgcacctttgatggtcgtgacttctgcgatccaccgcag
cgaggacgcagtatggtctattgcaccgatactgtcttttgtgatagtgctgtggaactg
gcccagcaggcggatgtcctcattcacgaagccaccttttcccatcaggaggcgaatctg
gcctttgcccgcctccactccacatccaccatggcggcgcaggtagctgcttttgcccaa
gtgaaattgctttttctcacccactttagcgcccgctacgcccccggcaaccctgtgcag
gtggaagatcttttggcagaagcccaagccattttcccaaatacccgcttggcgcaggat
tttctccactacgcgattccccgcgatggtcagatctgcgcggaaatgccccctagcgac
agtcctgctgcagctaatatagacactctggaggcaaccctagagccacttgaggcgcaa
accgttgctgcggatgcaaaaaatgcgccggcgatcgccatcaaccgtgctactcgccaa
cagatgcaacaaaaactaggaattgacgccaccacggccaatgcaattttagaacggcgg
cgacagcaaaagtttacctgcctcggggaacttgaacgcctctatccccaagtggattgg
tcagccctcaatgtcctcttctaa
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