Thermostichus vulcanus: NIES2134_121140
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Entry
NIES2134_121140 CDS
T05980
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tvn
Thermostichus vulcanus
Pathway
tvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES2134_121140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvn03019
]
NIES2134_121140
03016 Transfer RNA biogenesis [BR:
tvn03016
]
NIES2134_121140
Enzymes [BR:
tvn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NIES2134_121140
Messenger RNA biogenesis [BR:
tvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NIES2134_121140
Transfer RNA biogenesis [BR:
tvn03016
]
Prokaryotic type
tRNA degradation factors
NIES2134_121140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S4
Motif
Other DBs
NCBI-ProteinID:
BAY52806
LinkDB
All DBs
Position
complement(2145598..2147745)
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AA seq
715 aa
AA seq
DB search
MKGLEKIIPLDGRDIKVVLQKFAPQAAGSILISSGETAVLVTANRAAAREGIDFLPLVVD
YEERLYAAGRIPGGFLRREGRPPEKAILIGRLIDRPLRPLFPQWLRDDLQVVATTVSLDE
NAPPDVLAVTGASIAVLLAQIPFNGPMAAVRVGLVGDEFVINPTYKEIERGGLDLVVAGS
PDGVVMVEAGANELPEADMIEAIDFAYEVIRDLIQAQRDLLKELGIDIVRAEPPAIDPTL
ENFIYDRAAEPVKAILKRFEKDKNVRDAALDEVQGAIAQEIAALPEDDPVAVAAAENPKA
LPTLFKAVTKKLMRQQILEEGVRVDGRRLDEVRPIWCEVGVLPERVHGSALFNRGLTQVM
SVTTLGSPADAQALDDLHPEDSKRYLHHYNFPPYSVGEVKPLRSPGRREIGHGALAERAL
EPVLPPKEEFPYVIRVVSEVLSSDGSTSMGSVCGSTLSLMDAGVPIRKPVSGAAMGLIKE
GNEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLPVAVIQQAIEQARPARL
HILEKMLAVLDKPRPQLPPSAPRLLTLQIPPDMIGLVIGPGGKTVRGISEQYNVKVDISE
EGLVTITAPNETNAKQARAAIEGLTRKLNAGDVYLGRVTRIIPIGAFVELLPGKEGMIHI
SQLAEYRVGKVEDEVKIGDEIVVKIREVDSKGRINLTRLGIHPDEAEAARSNSVV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtctagaaaagattatccccctagatggacgggatattaaggtagtattgcaa
aaatttgccccccaagctgccggttccattctcattagttcgggagaaacggctgtactg
gtaacagccaaccgtgctgctgcgcgcgaaggcattgattttttgccccttgttgttgat
tacgaagagcgcctctatgcggctggccggattcccggcggttttttacggcgtgagggt
cgcccccccgaaaaagccattctcattggtcgtctgattgaccggccgctgcgccctctc
tttccccaatggttgcgcgatgatctccaagtggtggcaacgacggtttcgctggatgaa
aatgctccccccgatgtgttggcggtaacgggagcctcgatcgctgttctgttggcacaa
attccctttaatggcccgatggccgcggtgcgggtgggccttgtgggggatgagtttgtt
atcaaccccacctacaaagaaattgagcgcggtggcttggatctggtcgtcgccggctct
cccgatggggtggtgatggtggaggctggtgccaatgaactgccagaagccgacatgatt
gaggccattgactttgcctatgaggtgatccgagacctgattcaagcgcagcgggatctc
ctcaaggaattgggcattgacattgtccgcgctgagccaccggcgatcgaccccacctta
gaaaactttatctacgatcgcgccgctgaaccggtcaaagccattctcaaacgctttgaa
aaggacaaaaatgtccgcgatgcagccctcgatgaggtgcaaggggcgatcgcccaagaa
attgctgccctgcccgaggatgacccagtggctgtggcggcggcggaaaaccccaaagcc
ctacccaccctctttaaggccgtcacgaaaaaactcatgcggcagcaaattcttgaagaa
ggggtgcgagtggatggccgccgtctcgatgaagtgcgtcccatttggtgtgaggtgggg
gttctcccagagcgggttcatggcagtgccctctttaatcgtggcttgacgcaggtgatg
tccgtgactaccctcggttctcctgccgatgcccaagccctggatgatttgcatcccgag
gacagcaaacgttacctgcaccactacaactttcccccctactccgtcggtgaagtcaaa
cccctgcgatcgccggggcggcgagaaattggccatggtgcccttgctgagcgtgccctt
gaacccgtccttccccccaaggaggagtttccctacgtgatccgagtcgtgtcggaggtg
ctctcttccgatggctcgacctccatgggatccgtttgtgggtccaccctctcgttgatg
gatgccggggtacccatccgcaagcccgtcagtggtgcagctatgggattgatcaaggag
ggcaacgaggtgcgcatcctcaccgacattcagggaattgaagacttccttggtgacatg
gacttcaaagttgccggaaccgatagcggcatcactgccctgcaaatggatatgaaaatt
accggcttgcccgttgccgtgattcagcaggcgattgaacaggcgcggccggcgcggctg
catatccttgagaaaatgctggcagtgctcgataaaccccgtccccaactgccccccagt
gcgccacggctgctgacgttgcagattcctccggatatgattgggctggttattggtcca
gggggcaaaacggtgcgcggtatctctgagcaatacaacgtcaaggtggacatcagcgaa
gaagggctcgtcaccattactgcccccaatgaaaccaatgcgaagcaagcacgggctgcc
attgagggtctaacgcgaaagctcaatgccggtgatgtctatctgggcagggtgacacgg
attattcccatcggtgcttttgttgagcttctcccgggcaaagaggggatgatccacatt
tcccagttggcggagtatcgcgttggtaaggtcgaggacgaagtgaaaattggcgatgaa
attgtcgtcaaaatccgtgaggtggacagcaaaggccgcattaacctcacccgccttggc
attcatcccgacgaggccgaagccgcccgcagtaactccgttgtctag
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