Thermostichus vulcanus: NIES2134_124280
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Entry
NIES2134_124280 CDS
T05980
Symbol
rpoA
Name
(GenBank) RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tvn
Thermostichus vulcanus
Pathway
tvn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tvn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES2134_124280 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvn03021
]
NIES2134_124280 (rpoA)
03400 DNA repair and recombination proteins [BR:
tvn03400
]
NIES2134_124280 (rpoA)
Enzymes [BR:
tvn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES2134_124280 (rpoA)
Transcription machinery [BR:
tvn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES2134_124280 (rpoA)
DNA repair and recombination proteins [BR:
tvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES2134_124280 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
RNA_pol_L_2
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BAY52502
LinkDB
All DBs
Position
complement(2462793..2463758)
Genome browser
AA seq
321 aa
AA seq
DB search
MAYQIECLETRVEEDQGQYGQFALHPLAPGQGITVGNALRRVLLSNLPGSAVTAVRIAGV
NHEFSTIPGVREDVMDILLQMKQLVIRSHTSEPQMGRLFAQAPENEPLTVTAGMVQLGSE
VEVVNPNHYIATLMPGATLEMEFKIEKDRGYRSVERVRDDRLALDYLQLDAVFMPVRRVN
YTVDSVRSAGAEGDRQLQDYLKLEIWTNGSLTPQDALNQAATILVDLFSPLKEVPLHTSE
ATATDDHDETGQIPIEQLNLSVRAYNCLKRAQVNTVADLLEYSQEELLEIKNFGQKSAEE
VIEALQKHLGITLPPQKAARN
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatcaaattgaatgcttggaaacacgggttgaggaggatcaggggcagtacggc
caatttgccctgcatccccttgctcccggtcaagggattacggtggggaatgccctgcgg
cgggttctcctttccaacttgcccggtagtgctgtgacagcggtgcgaatcgcgggcgtc
aatcatgagttttcgacgattcctggtgtgcgcgaagatgtcatggacattttgctgcaa
atgaagcagttggtgattcgcagccacacctcagaaccccaaatgggtcgtctttttgct
caagcccctgagaatgagccattgacggttaccgcgggtatggtgcaacttggctctgaa
gtggaggtggtcaaccccaaccactatattgccacgctgatgccaggggcaaccttggag
atggaatttaagattgaaaaggatcgtggctatcgctcggtggagcgggtgcgcgacgat
cgccttgctttggactatctccaattggatgctgtctttatgcctgtgcggcgggtgaac
tacaccgttgattctgtgcgcagtgccggtgctgagggcgatcgccagctccaagactac
ctgaagctggaaatctggacaaatggcagcttgacccctcaagatgccctcaatcaggcg
gcaaccatccttgtcgatctctttagccccttgaaggaagtgcccctacacacctctgag
gccaccgccaccgacgaccatgacgaaacggggcagattcccattgagcaactgaatttg
tcagtacgtgcctacaactgcctcaagcgtgcccaagtgaatacggtggctgatcttctt
gagtactcccaagaagagctactggagatcaaaaacttcggtcaaaagtcggccgaggaa
gtgatcgaagcactgcaaaaacacttgggaattacgctaccgccccaaaaagctgcccgt
aactag
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