Thermoplasma volcanium: TVG0012073
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Entry
TVG0012073 CDS
T00042
Symbol
TVG0012073
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
tvo
Thermoplasma volcanium
Pathway
tvo03022
Basal transcription factors
tvo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tvo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TVG0012073 (TVG0012073)
09124 Replication and repair
03420 Nucleotide excision repair
TVG0012073 (TVG0012073)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvo03021
]
TVG0012073 (TVG0012073)
03036 Chromosome and associated proteins [BR:
tvo03036
]
TVG0012073 (TVG0012073)
03400 DNA repair and recombination proteins [BR:
tvo03400
]
TVG0012073 (TVG0012073)
Enzymes [BR:
tvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TVG0012073 (TVG0012073)
Transcription machinery [BR:
tvo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TVG0012073 (TVG0012073)
Chromosome and associated proteins [BR:
tvo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
TVG0012073 (TVG0012073)
DNA repair and recombination proteins [BR:
tvo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TVG0012073 (TVG0012073)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
PhoH
CTP_synth_N
CatAgl_D2
Thioredox_PDIA6_C
Motif
Other DBs
NCBI-ProteinID:
BAB59155
UniProt:
Q97CT8
LinkDB
All DBs
Position
10190..12073
Genome browser
AA seq
627 aa
AA seq
DB search
MLINSEIISLSGSMYEDRSYQNEAIDFIASKLANYPGVALEAPTGSGKTMMALLGSLKYA
YNGHLKILYLVRTNSQEEQVIRELRTISKNRKIRALPMQGRINLCILYKTADDLKEATAE
SLSKFCNSRKRQVMEGHQEACPYYTIKVRSKETKDFLFENLPTAEEFYEYAFTNNLCPYE
SIKASLSDADIVVAPYMYFLNKTVADRFLSHWGVSREQLIIVLDEAHNLPDIGRSLGSFR
ISIESLNRSEKEAQSFGDPELDRGVHVTDFIEMIRSTLERTIKERVKEDDVRIRFQEFKE
YLMIMNKKSEKSIRDLNNYLYLFGEYVENEKEKAGKVPVSYCSSLAQRLEAMMDEDDAMY
AAILSKSESGYIQASCLDPSSILSSLKESKTIHMSGTLEPFEFYSDVTGFDIPFRRIENV
FPIENRFVSYYEGVSTKYDTLDENEIRKLASIIENIVNGVKRNTIVYFPSYAVMDKVIGS
GLDFDFLQEKKNLDQTEFYDVVKKFRNGGKPLLAVSGGRLSEGMNFPGRELELILIAGIP
FPRPDATNRALYDYYEMKYKKGWEYAVLAPAIIKIRQEIGRLIRGKDDHGACVILDKRAK
QFRRFIPDLVKTDDPVNDINTFFSNFK
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgttgattaactctgaaataattagtctttctggttcaatgtatgaggataggagctat
caaaatgaagctatagattttatcgccagtaaacttgccaattaccctggcgtagcactg
gaagctccaacagggtcaggaaaaactatgatggccctccttggttctcttaaatatgcg
tataacgggcatttgaaaatactgtatcttgtaaggacaaattcacaggaagagcaggtc
ataagagaacttaggacaatatcaaaaaataggaaaataagagcactacctatgcaggga
aggataaatctctgcatactgtacaagactgccgatgatctgaaggaggcaaccgcagaa
tctctttcaaaattctgcaatagccgcaaaaggcaggtaatggaaggccatcaggaagca
tgcccttactacaccataaaggtcagatcaaaagaaacgaaggattttttgtttgaaaac
ttacctacggctgaagaattttatgaatatgcttttacgaataacttgtgcccatacgag
agtattaaggcgtcactttcagatgcagatatagtagtggcgccttacatgtattttcta
aataaaactgtcgccgataggttcctctcgcactggggggtatctagggaacagttaata
atagttttagatgaggcccacaatctgccggatattggtagatcccttggttctttcagg
atatccatagaatcattaaacagatctgaaaaggaggcccaatcatttggagaccctgaa
cttgatagaggtgtgcacgtaacagacttcatagaaatgataagaagcactcttgaacgt
acaataaaggaaagggtaaaggaagacgatgttagaataagatttcaggaattcaaggaa
tacttaatgataatgaacaagaaaagcgagaagtcaataagggatctcaataactatctc
tatttgtttggagaatacgttgaaaacgaaaaggagaaagccggcaaggtacctgtttca
tactgttcttcgctcgcccaaaggctagaagccatgatggatgaagatgatgctatgtat
gcagctatattatcaaagtcagaatctggctatatacaagcgtcatgcctagacccatca
tctatattatcatcgttgaaggagtcgaagaccatacatatgtctggtacattggaacca
ttcgaattttattctgacgtaactggctttgatataccattccgcaggatagaaaatgtt
tttccaattgaaaaccgatttgtctcctattacgaaggtgtttcaacaaagtatgatact
ctcgatgagaacgaaataaggaaactagctagcataatagaaaatatcgttaatggcgtc
aagaggaatacaatagtttattttccctcctatgcagtaatggacaaagttataggatct
ggtctagatttcgactttctgcaggagaagaagaacttagatcaaactgaattttacgat
gttgtcaaaaaattcagaaacggcgggaagcctctgcttgctgtctctggaggtcgcctg
tctgagggcatgaactttcctgggagggaattagagcttatactaatagcaggcataccg
tttcccaggccggatgcaacgaacagggcactgtacgattattacgaaatgaagtacaaa
aaaggatgggagtatgcagtgcttgcgcctgctataattaagattaggcaggagataggg
aggcttataaggggaaaagatgatcacggggcctgcgtaatacttgacaaaagagcaaaa
cagttcaggagatttataccagaccttgtcaaaacagacgatccagtgaatgacataaac
actttcttttccaacttcaagtaa
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