Thermoplasma volcanium: TVG0319243
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Entry
TVG0319243 CDS
T00042
Symbol
TVG0319243
Name
(GenBank) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
tvo
Thermoplasma volcanium
Pathway
tvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVG0319243 (TVG0319243)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvo03019
]
TVG0319243 (TVG0319243)
Messenger RNA biogenesis [BR:
tvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TVG0319243 (TVG0319243)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TVG0319243 (TVG0319243)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
RRP40_S1
KH_1
ECR1_N_2
KH_6
KH_2
S1
TFA2_Winged_2
KH_N4BP1_2nd
Motif
Other DBs
NCBI-ProteinID:
BAB59451
UniProt:
Q97BZ6
LinkDB
All DBs
Position
318533..319243
Genome browser
AA seq
236 aa
AA seq
DB search
MYQLGDVKKIVLPGDPVEVQGKIRNGIYRGPDNKYYSEYFGTLQVSDQYVDVVPFSGQYI
PRKGDKVIGKIIEVGPSTWTVDINSPYFAMLHMNDTPWRISSGDLKRYLNSGDYVYAKIM
SVNEIKESWLTLKEPGLKKLEGGHMVLIHASRVPRVIGKGGGMVNMVKELTSTRIIIGQN
GLIWIDGPIEGVTMAIAAIEMIEREAHTEGLTVRVESFLKELRGDKDGNQQDKANQ
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
gtgtatcagttgggcgatgttaaaaaaatagtgttgcctggagaccctgtggaggttcag
ggcaagatcaggaatggaatatatagaggccctgacaacaagtattattcggaatatttc
ggcacgcttcaggttagtgaccagtacgttgatgttgtgcccttttcaggccagtatata
ccaagaaagggggataaggtaattgggaaaataatagaggttgggccttctacttggacc
gtggatatcaattcgccttattttgctatgcttcatatgaacgacactccatggcggata
tcttctggcgatctgaagagatacctaaactcaggcgattacgtatacgcaaagatcatg
agcgtaaacgagatcaaagagagctggttgaccctaaaggaaccaggcctgaaaaaactg
gaaggaggccatatggtgcttatccatgcatcaagagtaccaagggtcatagggaagggc
ggtggcatggtcaacatggtcaaagagctcacatcaactcgtatcataatcggtcagaac
ggccttatatggatcgacggtccaattgaaggtgtgaccatggccatagcggctattgag
atgatagaacgtgaggcccatactgagggcctaactgtacgtgttgagagttttttgaaa
gaactaaggggtgataaagacggaaaccagcaagataaagctaatcaatga
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