Thermoplasma volcanium: TVG0319949
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Entry
TVG0319949 CDS
T00042
Symbol
TVG0319949
Name
(GenBank) ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
tvo
Thermoplasma volcanium
Pathway
tvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TVG0319949 (TVG0319949)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvo03019
]
TVG0319949 (TVG0319949)
Messenger RNA biogenesis [BR:
tvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TVG0319949 (TVG0319949)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
TVG0319949 (TVG0319949)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BAB59452
UniProt:
Q97BZ5
LinkDB
All DBs
Position
319203..319949
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AA seq
248 aa
AA seq
DB search
MIKTETSKIKLINEDNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGP
KEAYPKHSQDIDHAVVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFP
RAEIDVYIEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEE
DNFGEADIPMAIMPKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQRNALLNKYK
IEGIEGGE
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
gtgataaagacggaaaccagcaagataaagctaatcaatgaagataacctaaggctcgat
ggaagatcattcaatgaacttaggcccataaagatcgaagcaggtgtattaaacagagct
gatggatcggcatacatagaatggggaggcaataaaataatagtaggtgtgtatggtcca
aaggaagcttatccgaagcactcgcaggatatagatcatgcggttgttaaagccagatac
aacatggccgcattttcagttgatgaaagaaagcggcctggcccagataggagaacaatg
gaaatatcaaaagtcatttctgaagccttaagttcgtccattatgattgaacaattcccg
agggctgaaatagatgtatatattgaggtattgcaggctgacgctggcactagaatcgct
ggattaactgcagctacagttgcacttgcagacgcaggcattccaatgagggatatggtc
gtcgggtgcacagctggaaaggtggatggacacatcgtgcttgatctatcgaaggaagaa
gataacttcggtgaggcagacatacctatggctattatgcctaaaacaggtgaaatagta
cttctgcaaatggatggtgatgtgacggaagatgaattctatgaggcaacatcaatgatc
atagaggctactaagaagatatctcagatacagagaaacgcccttcttaataagtataag
atagagggcatagaagggggtgaataa
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