Trichosurus vulpecula (common brushtail): 118828193
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Entry
118828193 CDS
T10126
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03040
Spliceosome
tvp05202
Transcriptional misregulation in cancer
tvp05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118828193
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
118828193
05205 Proteoglycans in cancer
118828193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvp03041
]
118828193
03009 Ribosome biogenesis [BR:
tvp03009
]
118828193
Enzymes [BR:
tvp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118828193
Spliceosome [BR:
tvp03041
]
Complex A
U1 snRNP components
U1 related factors
118828193
Complex B
118828193
Ribosome biogenesis [BR:
tvp03009
]
Eukaryotic type
Pre-60S particles
Helicases
118828193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
118828193
NCBI-ProteinID:
XP_036590536
LinkDB
All DBs
Position
8:149020793..149022997
Genome browser
AA seq
614 aa
AA seq
DB search
MSGYSSDRDRGRDRGFGAPRFGGSRGGPLSGKKFGNPGEKLIKKKWNLEELPKFEKNFYQ
EHPDLARRTAQEVDTYRRSKEITVRGHNCPKPILNFYEANFPANVMDVIARQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPERLIDFLECGKTNLR
RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
MRRDGWPAMGIHGDKSQQERDLVLNEFKHGKAPILIATDVTSRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLIEDRGS
GRSRGRGGMKDDRRDRHSAGKRGGLNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAASY
TSGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGNNVPNMHNGMNQQAHAYPAAAA
APMIGYPMPTGYSQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtctggatactcgagtgacagagaccgcggccgggatcgagggtttggggcccctagg
tttggaggaagtagaggaggacctctatctggaaagaaatttggaaaccctggggagaaa
ctcattaaaaagaaatggaatctcgaagaactgcccaaatttgaaaagaatttttatcaa
gaacatcctgatttggctaggcgcacagcacaagaggttgatacatatcgaaggagcaaa
gaaattacagtacgaggtcacaactgcccaaaaccaattctaaatttctatgaagcaaat
tttcctgcaaatgtcatggatgtaattgcaaggcagaactttactgaacctactgctatc
caagcccaaggctggcctgttgctctaagtgggttggatatggttggagtagcacagact
ggatcagggaaaacactgtcttatttgctgcctgccattgtccatataaatcatcagcca
ttcctagagagaggtgatgggcctatttgtttggtgctggcgccaactcgtgaactggcc
caacaggtacagcaagtagctgctgaatacagtagagcatgtcgtctaaaatccacttgc
atctatggtggtgctccaaagggaccacaaatacgggacttggaaagaggtgtagaaatt
tgcattgcaacacctgaaagactgatagactttttagagtgcgggaaaactaatttgaga
agaacaacttaccttgtgcttgatgaagcagacagaatgcttgatatgggctttgagcct
caaatcaggaagattgttgatcagataagacctgacagacaaaccctaatgtggagtgca
acttggccaaaagaagtgaggcagcttgctgaagactttttgaaagattacattcacatc
aacattggtgctttggaactgagtgcaaatcacaatattcttcagattgtggatgtgtgt
catgatgtagaaaaggatgagaaacttattcgattgatggaggagatcatgagcgaaaag
gaaaataaaactattgtttttgtggaaaccaaaagaagatgtgatgaacttaccagaaaa
atgaggagagatgggtggcctgcaatgggtatccatggtgacaagagtcaacaggagcga
gacttggttctaaatgaattcaaacatggaaaagctcctatcctgattgccacagatgtt
acatctagagggctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcttcagaggattatatccaccgaattggacgaactgcccgtagtaccaaaacaggcaca
gcatacactttctttacacctaataacataaaacaagtaagcgacctcatctctgttctt
cgggaggctaatcaagcaatcaatcccaaattgcttcagttaattgaagacagaggttca
ggtcgttccaggggtagaggaggcatgaaggatgatcgacgggacagacactctgcgggc
aaaaggggtggattaaatacctttagggacagggaaaattatgacagaggttattctagt
ctgcttaagagagattttggggcaaaaactcagaatggtgtctacagtgctgcaagttac
accagtgggagctttggaagtaattttgtgtctgctggtatacagactagttttaggact
ggtaatccaacagggacttaccagaatggttatgacagtacacagcaatatggaaataat
gtcccaaatatgcacaatggcatgaaccaacaggcacatgcatatcctgctgctgcagct
gcacctatgataggttatccaatgccaacaggatattctcaataa
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