Trichosurus vulpecula (common brushtail): 118829899
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Entry
118829899 CDS
T10126
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03013
Nucleocytoplasmic transport
tvp03015
mRNA surveillance pathway
tvp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118829899
09122 Translation
03013 Nucleocytoplasmic transport
118829899
03015 mRNA surveillance pathway
118829899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118829899
03041 Spliceosome [BR:
tvp03041
]
118829899
Enzymes [BR:
tvp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118829899
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118829899
Spliceosome [BR:
tvp03041
]
Complex C
Other components
EJC/TREX
118829899
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118829899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118829899
NCBI-ProteinID:
XP_036592625
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All DBs
Position
1:453446810..453448221
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AA seq
433 aa
AA seq
DB search
MAENDVDNELLDYEDNVETAGGGGGGGRGDGAEAPAKKDVKGSYVSIHSSGFHDFLLNPE
LLQAIVDCDFEHPSEVQHECIPQAILGMNVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS
VLVMCHTRELAFQICKEYQRFSKYMPNVKVAVFFGGLSIKKDEELLKKNCPHVVVGTPGR
ILALARNKILNLKHIKHFILDECDKMLEQLDMRQDVQEIFCMTPREKQVMMFSATLSKEI
HPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNKKNRKLFDLLDVLEFNQVVIFVK
SVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSWYQQFKDFQRRILVATNLFGWGMDIER
VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFQVNISELP
NEIDISSYIEQTR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgacgtggacaatgagctcctggattacgaagacaatgtggagacggcc
gggggggggggagggggggggaggggggacggagccgaggcccctgccaagaaagatgtg
aagggttcctacgtctccatccacagctctgggttccatgactttctcctcaatccagag
ctgctccaggccatcgtagactgtgactttgagcatccgtccgaagttcagcatgagtgt
attcctcaggccatcttgggaatgaatgtcttgtgccaggccaagtcaggcatgggaaag
acagctgtgtttgtgctggccacgctgcagcaactggagccagtcactggtcaggtttct
gtgctggtgatgtgtcacacacgggagctggcctttcagatctgcaaggagtaccagcgc
ttctccaaatacatgcctaatgtcaaggtggcggtgttttttggtggtctatcaataaaa
aaggatgaggagttgctgaagaagaactgcccacatgttgtcgtggggaccccaggccgt
atcttagccctggcccgaaataagatcctcaatctcaaacacattaaacattttatcttg
gatgagtgtgacaaaatgctcgaacagctcgacatgcgtcaggatgtccaggaaattttc
tgcatgaccccccgtgagaagcaggtcatgatgttcagtgccaccctgagcaaagagatc
caccctgtctgccgcaagttcatgcaagacccaatggagatcttcgtggatgatgagacg
aagctgactctgcatgggctgcagcagtactacgtgaagctgaaggacaataagaagaac
cgaaagctcttcgacctcctggatgttctggagttcaaccaggtggtgatcttcgtgaaa
tctgtgcagcgctgcattgccctggcccagctcctagtggaacagaacttcccggccatt
gctatccatcgtgggatgccccaagaggagaggttgtcctggtatcagcagttcaaggat
ttccagcgtcgtattcttgtggccactaacctgtttggctggggcatggatattgaacga
gtaaacatcgccttcaactatgatatgccagaggactcagacacctacttacacagggtg
gctagggcaggccggtttggtacaaagggtttggccatcacatttgtatcagatgaaaat
gacgccaaaatcctcaatgacgtccaggatcgcttccaggtcaacatcagtgaactgccc
aatgagatagacatctcttcctacattgagcagactcggtag
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