Trichosurus vulpecula (common brushtail): 118830105
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Entry
118830105 CDS
T10126
Symbol
TAF5
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118830105 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvp03021
]
118830105 (TAF5)
03036 Chromosome and associated proteins [BR:
tvp03036
]
118830105 (TAF5)
Transcription machinery [BR:
tvp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118830105 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
118830105 (TAF5)
Chromosome and associated proteins [BR:
tvp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
118830105 (TAF5)
STAGA complex
118830105 (TAF5)
TFTC complex
118830105 (TAF5)
SAGA complex
118830105 (TAF5)
SLIK complex
118830105 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_Nup120_160
Beta-prop_RIG_1st
RAB3GAP2_N
CDK5RAP3
eIF2A
Cytochrom_D1
VPS8_N
Motif
Other DBs
NCBI-GeneID:
118830105
NCBI-ProteinID:
XP_036592890
LinkDB
All DBs
Position
8:complement(111241300..111258808)
Genome browser
AA seq
823 aa
AA seq
DB search
MAALAEEQTEMVIKPDPEGPPXAPCHAAGDCPGEGGGGSHSSSHNGGGGGGVAASSAGGD
GGTPKPAVAAPAAAAAAATAAPGARPGLPAAAAEGIASQDRQTLLAVLQFLRRSNLRESE
EILRREARLLEEAAGAGAPGEVDGPGAEATSALLSRVASAAAAGPQXPGPGSGSGPGSGA
CPCVRGPPPSSVTGTGSSGAAQTVAAPAKIGVVAVEDQPDVSAVLSAYNQQGDPAMYEEY
YSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQD
DLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHL
YIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFFGLLKEPEIEVPLDDEDEEGENEE
GKPKKKKPKXDSMGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDC
LPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKTATDLSLID
KESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTC
LVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHP
NSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGRFLATGATDGRVLLWD
IGHGLMVGELKGHTDTVCSLKFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATG
HINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggcagaggagcagaccgagatggtgatcaagcctgacccggagggaccg
ccgnncgctccctgccacgcagccggcgactgtccaggcgagggcggcgggggcagccac
agcagcagccataacggaggcggcggcggcggtgtcgcggcgtcctcagccggcggcgat
ggcgggactccgaagcccgccgtggctgctccggcagctgcggcggcggcggcgacagca
gccccgggggcgcggccgggacttccggcagccgctgctgagggcatcgcctctcaggac
cggcagaccctgctggccgtgctgcagtttttgcggcggagcaacctacgcgagtcggag
gagatcctgcggcgcgaggcccggctgctggaggaggcggcgggagccggcgccccaggg
gaggtggacgggcccggggcggaggccaccagcgcgctcctgagccgggtcgcctccgcc
gccgccgccggcccacagnngccgggccccggctcgggctccggccccggctccggcgcc
tgcccctgcgtccgcgggcccccgccgtcctcggtgactggaacggggagctcgggggcc
gcccagaccgtggccgctccggctaagattggagtggtggctgtagaagaccagcctgat
gtcagtgctgtgttgtctgcctacaatcagcagggggatccagcgatgtatgaagagtac
tacagtggactgaagcatttcattgaatgttccttggactgtcatcgagcagagttatct
cagttattttatcctctatttgtacatatgtacttggagttggtctacaatcagcatgaa
aatgaagcgaaatcattctttgagaagtttcatggcgatcaggaatgttattatcaggat
gatctgcgagtgttatctagccttaccaaaaaggagcacatgaaagggaatgagaccatg
ttggattttcgaacaagtaaatttgttttgcgcatttcccgtgactcttatcaactcttg
aagagacacctccaggagaaacagaacaaccaaatatggaacatagtccaggagcacctg
tacattgacatcttcgatgggatgcctcggagtaagcaacagatagatgctatggtggga
agtttggccggagaggcaaagcgagaggcaaataaggcaaaggttttttttggcttgtta
aaagaaccagaaattgaagttcctttggatgatgaagatgaagaaggggagaatgaagaa
ggaaagcccaaaaaaaagaaacctaagnaagatagtatgggatctaaaagcaaaaaacaa
gatcctaatgctccccctcaaaacagaattcctcttcctgaattgaaagattcagataag
ttggataagataatgaatatgaaagaaaccacgaaacgtgtgcgtcttggtccagattgt
ttgccttccatctgtttctatacattccttaatgcctatcagggtctcactgcagttgat
gtcaccgatgactccagtctgattgcaggaggttttgctgattccactgtcagagtgtgg
tctgtgactcccaaaaagcttcgtagtgtgaagacagcaacagatctcagccttatagac
aaagaatcagatgatgttttagaaagaatcatggatgagaaaactgcaagtgaattgaag
attctctatggtcacagtgggcctgtttatggggcaagcttcagtcctgacagaaactac
ctactttcctcctcggaagatggcactgtcagactatggagtcttcaaacattcacttgt
ttggtaggatacaaaggacacaactatccagtgtgggacacacaattttctccgtatgga
tactattttgtgtcaggaggacatgacagagtggctcggttatgggctacagatcattat
cagcctttaagaatatttgctggccaccttgctgatgtgaactgtacacgatttcatcca
aactctaactatgttgctacgggttcagcagacagaacagtaaggctatgggatgtcctg
aatgggaattgtgtaaggatcttcactggacataagggaccaattcattctttggcgttt
tctcccaatgggagattcctggctactggagcaacagatggcagagtacttctctgggat
attggacatggcttgatggttggagaattaaaaggccatacagatacagtatgttcactt
aagtttagtagagatggagaaattttagcatcagggtcaatggataacacagttcgtttg
tgggatgctattaaagcatttgaagacctagagactgatgattttactacagccactgga
catataaacttgcctgaaaattcacaggatttattgttgggaacctatatgaccaagtca
acaccagttgtacatctccattttactcgaagaaacttggttttagctgcaggagcttat
agtccacaataa
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integrated database retrieval system
