Trichosurus vulpecula (common brushtail): 118830866
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Entry
118830866 CDS
T10126
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03082
ATP-dependent chromatin remodeling
tvp04714
Thermogenesis
tvp05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118830866 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
118830866 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
118830866 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvp03021
]
118830866 (SMARCC1)
03036 Chromosome and associated proteins [BR:
tvp03036
]
118830866 (SMARCC1)
Transcription machinery [BR:
tvp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118830866 (SMARCC1)
Chromosome and associated proteins [BR:
tvp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118830866 (SMARCC1)
PBAF complex
118830866 (SMARCC1)
GBAF(ncBAF) complex
118830866 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
118830866
NCBI-ProteinID:
XP_036593804
LinkDB
All DBs
Position
9:112179487..112386328
Genome browser
AA seq
1106 aa
AA seq
DB search
MAAAAGGGGGGAPGAAAGGAGPGGAAAAAVGLALCRRKDGGPAGKFWESPETVSQLDSVR
VWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGG
TLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPNIYLIPDI
ELKLANKLKDIVKRHQGTFTDEKSKASHHIYPNPTSLEDEDWLRPVMKKDKQVLVHWGFY
PDSYDTWVHASDVDAEIEDPPIPEKPWKVHAKWILDTDIFNEWMNEEDYEVDENKKPVSF
RQRISTKNEEPVRSPERRDRKAAASTRKRKHSPSPPPPTPAESRKKTGKKGQASLYGKRR
GQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETV
TTGGKEDEDPSKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFN
GKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVN
YQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRTPQVPAAQQMLNFPEKNKEKPTDL
QNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDE
CILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAK
AALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLDGT
EEEKMETETDGQQAEKVENKENEIDENDKTQDGENDKSIEKEQDSEVNEDTKSEEKDGEE
NKENDACKERENDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVAL
LVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQM
EQQQHGQNAQQSHQHSGGPGMNPIGAPGHPGMLPHQQPPPYPMMHHQMPPPHPPQPGQMP
GPGSMMPGQPMPGRMIPAVAANIHPSGGGPPPPVMPPMPGNIIGPRVPLAAPNGMYPPPP
QQQPPPPPPTDGVTPPPAAAPASSAP
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggcgggggcggcggtgccccaggggcggcggcaggcggcgcg
gggccggggggcgcggcggcggcggccgtgggcctggcgctgtgtcggcggaaggacggg
ggcccggcgggcaagttttgggagagcccagagacggtttcccagctggactcggtgcgg
gtctggctgggcaagcactacaagaagtacgttcaagcagatgctcctacgaataaaact
ttggctgggctagtagtgcagcttctacagtttcaagaagatgcctttgggaaacatgtc
accaatcctgccttcactaagcttcctgcaaagtgcttcatggatttcaaagctgggggt
accttgtgtcacattcttggggctgcttacaagtataaaaacgaacagggatggagaagg
tttgacctacagaatccttcccgaatggatcgtaatgtggagatgtttatgaacattgaa
aaaaccctagttcagaacaactgtctgagcagacctaacatctacctcattccagacatt
gaactgaagttggctaacaaactaaaggacattgtcaaacgacatcagggaacattcact
gatgaaaaatcaaaagcctctcatcacatttatcctaatcctacctcactggaggatgaa
gactggttgagacctgtgatgaaaaaagacaagcaggtgctggtgcactggggattttac
ccagacagctacgatacttgggtccatgctagtgatgttgatgctgaaattgaagatcct
cctattccagaaaaaccatggaaagtccatgcaaaatggattttagacactgatattttc
aatgaatggatgaatgaagaagattatgaggtggatgagaacaagaaaccagttagtttt
cgtcagcgcatctcaacaaagaatgaagagccagtccgcagtcctgagagaagagatagg
aaagcagcagcaagtacaagaaagagaaaacattcaccttctcctccacctcctactcct
gctgaatcaaggaaaaagactggaaagaaaggacaagctagtctttatgggaagaggcga
ggacagaaagaggaagatgaacaagaagatctcactaaggatatggaagacccaacacct
gtacctaacatagaggaagtggtacttcctaaaaatgtgaacccaaagaaagacagtgaa
aatacaccagttaaaggaggaacagtagcagatctagatgagcaggatgaagaaacagtg
acaacaggaggaaaggaagatgaggatcccagcaaaggtgatcagagtcggtcaattgac
ccaggtgaagataatgtaacagagcagacaaatcatattatcattccgagctatgcatca
tggtttgattacaactgtattcatgtgatagaacgtcgtgctcttcctgagtttttcaat
ggaaaaaacaagtctaaaactccagaaatatacttggcatatcgtaatttcatgattgac
acataccgcttaaaccctcaagagtatttgaccagcactgcttgcaggcggaatttgacc
ggagatgtctgtgctgttatgagggttcatgcttttttagaacagtggggacttgttaat
taccaagttgatccagaaagtcgaccaatggcaatgggacctcctccaactcctcatttc
aatgtgctagctgataccccctctgggctagtgcctcttcatctcagaacacctcaggtc
cctgctgctcagcagatgttgaattttcctgaaaaaaataaggagaagcctactgactta
cagaattttggtctccgtacagacatttactccaagaaaaccttagcaaaaagtaaagga
gccagtgctggaagagaatggactgaacaggagacactgctgcttttagaggcccttgag
atgtacaaagatgattggaataaagtatcagaacatgttgggagtcgaactcaggatgag
tgcattctccactttctgagacttcctattgaggacccttatcttgagaactcagatgcc
tcccttggaccacttgcttaccaacctgtccctttcagtcagtcaggaaacccagtgatg
agtacagttgcattcttggcatctgttgtggatccacgggtagcatctgcagcagctaaa
gccgcattagaggagttttctcgagtccgggaagaagtaccattggaattagttgaagct
catgtcaagaaagtacaggaagcagcaagagcctctggaaaagtagatccaacatatggt
ctagaaagtagctgtattgctgggactggtcctgatgagccagagaaacttgatggtact
gaagaagaaaaaatggaaacagagacagatggacaacaggctgaaaaggttgaaaacaaa
gaaaatgaaattgatgaaaatgataaaacacaggatggagaaaatgataaaagtattgag
aaagaacaagatagtgaagttaatgaggataccaaatcagaagagaaggatggtgaagaa
aataaggaaaatgatgcctgtaaagagagagagaatgatactggaaagaagaaagtagag
catgagatttctgaaggaaatgtagccacggctgccgcagctgcccttgcctcagctgcc
accaaagcaaagcaccttgctgctgtagaagaaagaaagatcaagtctctggtggccctg
ctggtagagacacaaatgaagaagttggagattaaactccgtcattttgaggaactggaa
acaatcatggacagggagaaagaggctttagaacagcagagacagcagttactcactgaa
cgccagaacttccacatggaacagctaaaatatgctgaattaagggctcgccagcaaatg
gagcaacagcagcatgggcagaatgctcagcagtcccaccagcattctggaggacctggt
atgaacccaattggagcaccagggcatccaggaatgttgcctcatcagcagccccctcct
tatcccatgatgcaccatcagatgccccctcctcatccccctcaaccaggtcagatgcca
ggtcccggttccatgatgcctggacagcccatgccaggccgtatgattccagctgttgca
gctaatatccatccttctgggggtggtcctcccccacctgtcatgccaccaatgcctggg
aacatcattggaccacgagtaccccttgcagcacccaatggcatgtatcctcctcctccg
cagcaacagcccccaccacctcctcccaccgatggcgtcactcctcctcctgcagcagca
ccagcctcctcggctccctaa
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