Trichosurus vulpecula (common brushtail): 118831696
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Entry
118831696 CDS
T10126
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03082
ATP-dependent chromatin remodeling
tvp04714
Thermogenesis
tvp05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118831696 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
118831696 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
118831696 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tvp03021
]
118831696 (SMARCA2)
03036 Chromosome and associated proteins [BR:
tvp03036
]
118831696 (SMARCA2)
Transcription machinery [BR:
tvp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118831696 (SMARCA2)
Chromosome and associated proteins [BR:
tvp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
118831696 (SMARCA2)
Chromatin remodeling factors
BAF complex
118831696 (SMARCA2)
PBAF complex
118831696 (SMARCA2)
GBAF(ncBAF) complex
118831696 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
118831696
NCBI-ProteinID:
XP_036595009
LinkDB
All DBs
Position
9:39787693..40000434
Genome browser
AA seq
1570 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHSMPTM
GPTDFPQEGMHQMHKSIDGMHDKGIVEDLHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGPMIPGDPQAMSQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPSIQQQQPPLVTFNRPSGIGMHPIGTPP
AGPGQTSGIPGHTSTMTPKTWAEGQAPDMNVPSTPQKLAVPPPSGRPSPAPPATQPAAAL
PGPSVPQPTPGQPSPVVQLQQKQNRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELE
NLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQT
LREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVAT
WHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTN
LVWEHKQAQAAKEKKKKRRRKKKEQENAEGMESGLGPDGEPIDESSQMSDLPVKVTHTET
GKVLLGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSEYEEEDDEEELSRQETEEKILL
DPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLING
TLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPL
STLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAK
IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTI
FKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKV
EYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMF
QHIEESFAEHLGYSSGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIM
EDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQFFIFLLSTRAGGLGLNLQAADTVV
IFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG
MFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRR
EDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTE
KQWLRAIEDGNLEEMEEEVRLKKRKRRRNVEKEPGKEDVEKAKKRRGRPPAEKLSPNPPK
LTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHK
YRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNDEE
EEEDEDESESEAKSVKVKIKLNKKDEKGRDKGKGKKRQSRGKAKPVVSDYDSDEEQDEND
QSEASGTDDE
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgccaacagatcctggtgcaatgccccaccctgggccttcaccagggccagga
ccctcccctggaccaattcttggacccagcccaggaccagggccatccccaggttcagtg
cacagcatgatgggaccaagtcctggaccacccagtgttccacattcaatgccaacaatg
gggcccactgatttcccacaggaaggaatgcaccaaatgcacaagtccattgatggtatg
catgacaaaggaattgttgaagacctacattgtggctccatgaagggcaccggcatgcga
ccaccacatcctggaatgggcccacctcagagtccgatggatcaacatagccaaggttat
atgtctccacacccgtctccactgggagccccagaacatgtctccagcccaatgtctgga
gggggtccaactccaccccagatgccacctagccagccaggacccatgataccaggagat
cctcaggctatgagccaacccaaccgagggccttcacctttcagccctgtccagctgcat
cagctccgagctcaaattttagcttacaaaatgttggccagaggccagccactacccgaa
accttgcagctagctgtgcaggggaagaggacactgcctagcatccagcaacaacaacca
cctcttgtcaccttcaaccgaccatctggcatagggatgcatccaattggcacacctcca
gctgggccaggacagacatcagggattccagggcacacatctacaatgactcctaaaaca
tgggcagaaggccaagcaccagatatgaatgttccgagtaccccacaaaaacttgcggtt
ccacctccaagtggaaggccttcaccagctcctccagccactcagccagctgctgccctg
cctggaccttctgtgccccagccaactcctgggcagccttcacctgtggttcagctgcag
cagaagcagaatcggattagccccattcagaaaccacagggactggatccggttgaaatt
ctccaggagagagaatacagacttcaggctcgtatagctcacagaatccaagaactggaa
aatttgccagggtctttaccaccagatttacgaaccaaggctacggtggaactgaaggcc
cttaggttactgaattttcaacggcagttaagacaagaagtggtagcttgtatgcgtcga
gacacaaccttagagactgccctgaactccaaagcctacaaacgcagcaagaggcaaaca
ctgagggaagcccgcatgactgaaaagcttgagaaacaacagaagattgaacaggagagg
aagcgcagacagaagcaccaggaatacctgaacagcattttgcaacatgcaaaagatttt
aaagagtaccaccggtcagtggctgggaaaattcagaaactttctaaagcggtggcaact
tggcatgctaacactgaacgggagcagaagaaagaaacagaacgcattgaaaaggaaaga
atgcggaggctgatggctgaagatgaagaaggctaccgaaaactgattgatcagaagaaa
gataggcgcttagcttaccttttacaacagaccgacgagtacgtggctaacctgacaaac
ctggtatgggagcacaaacaagcacaagcagccaaagaaaagaaaaagaaaagacggagg
aagaagaaggaacaagagaatgctgaaggaatggagtctggcctgggaccagatggggag
ccaatagatgaaagcagtcagatgagtgatcttcctgtgaaagtgactcacacggaaact
ggtaaagttctccttggtcctgaagctcctaaagcaagtcaactggatgcttggttagaa
atgaatcctggttatgaagtcgcccctagatctgatagtgaggagagtgattctgaatat
gaggaggaggatgatgaagaggaattgagcaggcaggaaacagaagagaagatacttctt
gatccaaacagtgaagaagtttctgagaaggatgctaagcagatcattgagactgccaag
caagacgtggatgatgaatacagcatgcagtatagtgcgagagggtcgcagtcctactac
actgtagctcatgcaatatcggagagggtagagaagcagtctgctcttctcattaatggc
accctaaagcattatcagctccagggcctggaatggatggtttcactgtataataacaat
ttgaatggaattttagctgatgaaatggggctaggaaagaccatacagaccattgcactc
atcacttatctgatggagcacaaaagactcaatggaccctatctcatcattgttcccctt
tcgactttatctaactggacatatgaatttgacaaatgggctccttctgtggtgaaaatc
tcctacaagggaactcctgccatgcgccgatcacttgttccacaacttcgtagtggaaaa
tttaacgtccttttaactacttatgagtacattataaaggataagcacatccttgctaag
atccggtggaagtacatgatagtagatgaaggccatcgaatgaagaatcatcactgcaag
ctgactcaggtcttgaatactcactatgtggcaccaagacggatactcttgactggcacc
cccctgcaaaacaagttacctgaactctgggccctcctcaactttcttcttcccaccatt
ttcaagagctgtagcacatttgagcagtggttcaatgccccctttgccatgactggagaa
agggtggacttaaatgaagaagaaactatattgattatcagacgtcttcataaagtgctg
agaccatttctgctgaggagactgaagaaggaagtagaatcccagctaccagaaaaggtt
gaatatgtgatcaaatgtgatatgtcagctctacaaaaaatattgtaccgccatatgcaa
gcaaaggggattcttctcactgatggttcggagaaagataaaaagggcaaaggaggggct
aaaacactgatgaacactatcatgcagttgagaaagatatgcaatcacccatatatgttt
caacacatcgaggaatcctttgctgagcatctgggctactcaagtggggtcatcaatgga
gctgagctctaccgagcttcgggcaagtttgagctcctggaccgcatcctgccgaagctg
cgggccaccaatcaccgggtgctgctcttctgccaaatgacatccctcatgaccatcatg
gaggactattttgcttttcggaatttcctttacctacgccttgatggtaccacaaaatcg
gaagatcgtgctgccttgctgaagaagttcaatgagcctggttcacaatttttcattttc
ttattgagtaccagagcaggaggcctgggcctgaaccttcaggcagctgatactgttgtc
atctttgacagtgattggaatcctcaccaggatttgcaggcccaagatcgagctcaccgg
attggccagcaaaatgaagtccgagtgcttagactctgcactgtaaacagcgtggaggaa
aagattcttgcagcggcaaaatacaaattaaatgtggatcagaaagttatccaagcgggc
atgttcgatcagaaatcttcaagtcatgagagaagggcttttctgcaggctatattggag
catgaagaagaaaatgaggaagaagatgaagtccctgatgatgaaactctaaatcaaatg
attgcccgacgagaagaggaatttgatctttttatgcgtatggacatggaccggcgcagg
gaggatgcccggaacccgaaacgcaagcctcgcttgatggaagaagatgagctgccgtcc
tggattattaaagatgatgctgaagtagaaaggcttacctgtgaagaagaggaagagaaa
atatttggcagagggtcccgccagcgcagggatgtggactacagcgatgcactcacagag
aaacagtggctgagggcaattgaagacggtaatttggaagaaatggaagaggaagtgcgg
ctcaagaaacgaaaaagacgaagaaatgtggagaaggagcctgggaaggaagatgtggaa
aaagctaaaaagagaagaggccgaccgccagctgagaaattgtcgccaaacccccccaaa
ctgacaaagcagatgaatgccattattgatactgtaataaactacaaggatagttcaggg
cgacagctaagtgaagtcttcattcaacttccatcaaggaaagaattaccagaatactat
gaattaattaggaagccagtggatttcaaaaaaataaaggaaagaatccgtaatcacaaa
taccggagccttggtgatttggagaaagatgttatgctactctgtcataatgctcaaaca
ttcaacttggagggatcacagatctatgaggactccattgttctacagtcagtgtttaag
agtgcgcggcagaaaattgccaaagaagaagagagtgaagatgaaagcaatgacgaggaa
gaagaggaagatgaggatgaatcagaatctgaggcaaaatctgtgaaagtgaaaatcaag
cttaataaaaaagatgagaaaggccgggacaaaggaaaaggcaagaagaggcagagccga
ggaaaagccaaacctgttgtgagcgattatgacagtgatgaggagcaggatgagaatgat
cagtcagaagcaagtgggactgatgacgagtga
DBGET
integrated database retrieval system
