Trichosurus vulpecula (common brushtail): 118831892
Help
Entry
118831892 CDS
T10126
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tvp04121
]
118831892 (PDZRN3)
Enzymes [BR:
tvp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118831892 (PDZRN3)
Ubiquitin system [BR:
tvp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118831892 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
PDZ_Tricorn
zf-rbx1
TRAF3_RING
zf-TRAF
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
118831892
NCBI-ProteinID:
XP_036595257
LinkDB
All DBs
Position
9:168072129..168358493
Genome browser
AA seq
1064 aa
AA seq
DB search
MGFELDRFDGDVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVQCQRIS
TKELNHVLPLKSLILKLDIKCDHHGRGCERVVKLQQLGEHVEMCDYSPARCRHPGCGEVL
NLKDVDSHMRERCEARPAGLCEQGCGLVLTHGELRPGAHCCFQALKAHSGALQAKVAGLE
KELKKEALRAGKREKSLVAQLAAVQLELQMTALRYQKKFTEYSARLDSLSRSVASPGSKG
EEMKTMTLVLHRDSGSLGFNIIGGRPCVDNQEGSSSEGIFVSKIVDSGPAAKEGGLQIHD
RIIEVNGKDLSKATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPSLDSQLVDMGTQTDI
TFEHIMALTKMASPTPPVLDPYLLPEEHSSAHEYYDPNDYMGSIHQEMDRDELELEEVDL
YRLNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE
EAVALLTSEESKNVSLLIARPELQLDEGWLDDDRNDFLDDLHMDMLEEQHHQAMQFTASV
LQQKKHEEDEGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNADDHTTSSNTLGS
QRKLLYSQDTLGSGDVPFSNESFISADCTDADFLGIPVDECERFRELLELKCQVKSASPY
SLYYQNSALEVNKSDPESVDRELEILNEELRNIELECLNIVRAHKMQQLKEQYRESWMLH
NSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLRRI
AESIGCQGSDGAMGSSTACKASQRNLLSITESPETSSPKYCPSPKELDLSKQLENKEKKA
NEESKSPTQSPKLGGSYLSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSL
VSMCKDLNSSNQSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGMTTDDD
AISEMKMGRYWSKEERKQHVVKAKEQRRRREFMMQSRLDCLKEQQGAEEKKEMNIIELSH
KKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggatcgtttcgacggcgacgtggacccggacttcaagtgcaatcta
tgcaacaaggtcttggaagaccccttgaccaccccgtgcggtcatgtgttctgcgccggc
tgcgtcctgccctgggtagtgcagcagggcagctgcccggtgcagtgccagcggatctcc
actaaggagctcaaccacgtcctgccgctcaagagcctcatcctcaagctggacatcaag
tgtgaccatcacgggcgcggctgcgagcgggtagtgaagctgcagcagttgggggagcac
gtcgaaatgtgcgactactcgccggcacgctgccgccacccgggctgcggcgaggtgctc
aacctcaaggacgtggacagccacatgcgcgagcgctgcgaagcgcggcccgccggcctg
tgcgagcagggctgcggtttggtgctgacccacggcgagctgcggcccggcgcgcactgc
tgcttccaggcgctcaaggcgcacagcggcgcgctgcaggccaaagtggccggcctcgag
aaggagctcaagaaggaggcgctgcgggccggcaagcgcgagaagtcgctcgtggcgcag
ctggccgcggtgcagctggagctgcagatgacagcgctgcgctaccagaagaagttcacg
gagtatagcgcccggctcgactcgctcagccgcagcgtcgcctccccgggcagcaagggt
gaagaaatgaaaacaatgactcttgtccttcatcgtgactctggctctctgggatttaat
attattggtggccgaccgtgtgtggataatcaagagggatcatccagtgaaggaattttt
gtatcaaaaatagttgacagcgggccagctgccaaagaaggagggctgcagattcatgac
cggattattgaggtgaatgggaaagacttatccaaagcaacccatgatcaagctgtggaa
gctttcaagacagccaaagaacccattgttgtccaggtcttaaggcggacccctcgaaca
aagatgtttactccttcactagactcccagctggtggacatgggcacccaaactgacatc
acctttgagcatatcatggcgctgactaagatggcatcccccaccccaccagtgttggat
ccatatctcttgcctgaagagcattcatccgctcatgaatactatgatccaaacgattac
atggggagcatccatcaggagatggacagagatgagctagaactggaggaggtggatttg
taccgactgaacagccaagacaagctggggctcactgtgtgttaccggacggatgatgaa
gatgacattgggatttatataagtgagattgatcccaacagcatcgctgcaaaggatgga
cgcatacgagagggagaccggatcatccaaattaatggtatagaggtacaaaaccgagaa
gaagccgtggcacttctcaccagtgaagaaagcaagaatgtctccttgctcatagcaaga
cctgaactccagctggatgaaggatggctggatgacgacagaaacgatttcctggatgac
ttacacatggacatgctggaagaacagcaccaccaagctatgcagttcacagcaagcgtg
cttcagcagaaaaaacatgaggaggatgaaggcaccactgacaccgccacaatcttgtca
aaccagcatgagaaggacagcggcgtggggcgcacagatgagagcacccgcaacgacgaa
agttctgagcaggagaacaacgccgatgaccacaccacatcttctaacactctggggagc
cagaggaaactgctgtacagccaggacaccctagggagcggagacgtgcccttcagcaac
gagtcctttatttcagccgactgcacagacgccgacttccttgggatcccagtggacgaa
tgtgagcgatttcgggaactgctggaactcaagtgccaagtgaagagtgccagtccctac
agcctatattatcagaacagtgcccttgaagtgaacaagagcgaccctgagagtgtggac
agagagctggagatcctgaatgaagagctccgcaacatcgagttggaatgcctgaacatt
gtcagggctcacaagatgcagcagctcaaggagcagtaccgagagtcatggatgctgcat
aacagcggattccggaattataacaccagtattgacgtccgaaggcatgagctctcggac
atcactgagctccctgaaaaatcggacaaagatagttccagtgcctacaacactggagag
agctgccgcagtacaccactcaccctggaaatctccccagataactccctgcggagaatt
gccgaaagcatcggctgtcaaggcagcgatggggcaatgggcagctccactgcttgcaaa
gcatcccagagaaatctgctttccatcacagagagtccagagaccagcagccccaagtac
tgcccctctccaaaagagcttgaccttagcaaacagctggagaacaaagagaaaaaggcc
aatgaggaaagcaagagtccaacccagagtccaaagttaggtggctcttatctctccccc
tatcaccactccccctacaagcatgctcacatccctgcccatgcccagcactaccagagt
tacatgcagctgatccagcagaagtcagccgtggagtatgcccagagccagatgagtctg
gtcagcatgtgcaaggacttaaactcttccaaccagtccgaaccccgaatggaatggaag
gtgaagataagaagcgatggaactcgctacatcaccaagcggcccgtgcgagacaggctc
ctgcgcgagcgagccctgaagatccgagaagagcgaagcggcatgacaacggatgatgac
gccatcagtgagatgaagatgggaaggtattggagcaaagaggagcggaagcagcacgtc
gtgaaagccaaggagcagaggagaaggcgtgagttcatgatgcagagcaggctggactgc
ctaaaagaacagcaaggggctgaagaaaagaaggaaatgaacatcattgaactgagccac
aaaaagatgatgaagaagagaaacaaaaaaatctttgataattggatgacgatccaagaa
ctcttaacccatggtacaaagtcccctgatggcactagagtatataattccttcttatca
gtgactactgtataa
DBGET
integrated database retrieval system
