Trichosurus vulpecula (common brushtail): 118831907
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Entry
118831907 CDS
T10126
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp04612
Antigen processing and presentation
tvp05145
Toxoplasmosis
tvp05152
Tuberculosis
tvp05164
Influenza A
tvp05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
118831907 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
118831907 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
118831907 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
118831907 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
118831907 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tvp01001
]
118831907 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tvp04054
]
118831907 (CIITA)
Enzymes [BR:
tvp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
118831907 (CIITA)
Protein kinases [BR:
tvp01001
]
Serine/threonine kinases: Other
TAF1 family
118831907 (CIITA)
Pattern recognition receptors [BR:
tvp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
118831907 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
NLRC4_HD2
LRR_8
NB-ARC
LRR_Zer-1
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
118831907
NCBI-ProteinID:
XP_036595281
LinkDB
All DBs
Position
9:complement(48459436..48547843)
Genome browser
AA seq
1097 aa
AA seq
DB search
MDGVSSRSRATDQCAAMESGPLAEGSYLGLLQSDINPLQLFHFYDQPHTAEEEIEYSSDP
DTDTINCDQVNRLWNAIEDEGTGEAYDRIAALAEYMFSDRHLETEGIFDDIGPDEVISEN
IDVLTEIPQKSQKCQKRLFLDNPEPQSDSWEAKRRKPETSPAIPLVTSNSVTVSSSNNLV
PKGSLSPPPGQVAKPSLLSVEETVLVPTSPVLACLNFNGGPIQFIPTLSTLPQGVLHFTV
ENGVSNIFLYPASSGGDTIIQSLPVSPDRHGSTSPFAPSAADMPNMPEASALTSQDGKTE
SVEQFCRALHKAYADVPEGPNSHYIDLDLTRTQVEKNCKYLEKELVIQDWTERQKARVGW
REVFASTRGQKRETRVIAVLGKAGLGKSAWTQEVCRNWAQGQFPQYEFVFHYKCRSLNLP
GNDYCLKDLFFRLCNHPLEENEEVFKYILKHPNRILVILDSFEDLEGQDGFLNCPASPSP
GESRSIKGLLAGLFQRKLLRGCTLLITARPKGRFSQYLAKVDSLLEVQGFSPEQVESFFD
KYFQSSPSDRDEALRLVRAQPYLLSHCYSPTVCLSLCQLCEKILATKDPAQLPSTLTGLF
VSLLCSVLRAREKEPSETWPSTCLAGLAEMAWKLGRRHCNVLREDQFPSTEVKEFAILGD
FVWPLPTAREPEMAFSTFLLQNFLGALRLALSGEVRDKDLPRYLALTPRKKKPYDNWLER
VPHFLTGLLFQPLSSCLGPLGGIKQVGLVCKRQKVLLNYLTRLQPGTLGPGRLLELLHCA
HEATDSHLWQHVTAGLPSCLSFWGVRLTPPDVHVLGEALKAAGKDFSLDLRNTSIDLHGL
GILVQLGCVTCFRASLSDTVWLWESLRQSGEYELFRRSTEKFTIDPFKVKSMKDVEDLCS
LVHIQGSGNGPTEACDPLPAVRDLKKLEFALGPVLGPQGFPKLVKILAAFSSLQHLDLDT
LSQNKIGDEGVSQLSAIFPELKALETLNLSQNSITDVGAMELAKALPSLATSLVTLSLYN
NCICDTGAENLASVLPNMVSLRVLDVQYNKFTRAGAQKLTTSLKKCPHIETLAMWNPTIP
YGVQEHLQQQDSRISLR
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggatggggtctcctcaaggagccgagctactgatcagtgtgcagccatggaatctggg
ccattggcagaaggaagctacctggggctgctccaaagtgacattaaccccctacaactt
ttccacttttatgaccagccccacacagcagaagaagagattgagtactcttcagatcct
gatactgacacaatcaactgcgatcaggtcaacaggctgtggaatgccatagaagatgag
gggacaggagaggcctatgacaggatagcggcactagcagaatacatgttctcagatcga
cacctagagacagaaggcatttttgatgacattggcccagatgaggtgatcagcgagaat
atagatgtattgactgagataccacagaaatcacaaaaatgtcagaaaagattgtttctg
gataaccctgagcctcagtcagacagttgggaggccaagcgcagaaagccagagacatcc
ccagctattccattggtaaccagcaattcagtgacagtgtcttccagcaacaacttagtc
ccaaagggctctctgtctcctcccccaggccaggttgccaagcccagcctgctctccgtg
gaagaaaccgtcctggtgcctaccagtcctgttcttgcctgcctgaacttcaatggggga
cccatccaattcatccctaccctctctactctgccccaaggtgtcttacacttcacagtg
gaaaacggggtctccaacatcttcttatacccagcctcatcagggggtgataccatcata
cagagcctcccagtatctcctgacaggcatggctccaccagtccatttgctccatcggca
gcagatatgcccaacatgcctgaggcttcagctctaacctcacaagatggaaaaacagaa
tctgtagaacagttctgtcgtgctcttcacaaggcttatgcagatgttccagaaggtccc
aacagccattacattgatctagacctcacaagaacccaggtggagaaaaactgcaagtat
ctggagaaggaactggtgatccaggactggacagagagacagaaggcccgtgtgggatgg
agagaggtgtttgccagcaccagagggcagaagagggagacacgggtgatcgcagtactg
ggcaaggctggtctgggaaaaagtgcctggacccaggaggtctgtaggaactgggcccag
ggccagtttccacagtatgaatttgtctttcactacaaatgccgcagcctgaacttgcca
gggaatgactactgtttgaaggatctgtttttcagactctgtaatcacccactggaagag
aatgaagaagtcttcaaatacattttgaagcacccaaatcgcattctggtcattctggac
tcctttgaggacctggagggccaagacggctttctgaactgtccggccagtccctctcct
ggggagtcacggtccatcaaagggctactggctggcctcttccaaaggaagctcctgagg
ggctgtacgctgctgatcacagccaggccaaagggaagatttagtcagtacttggccaag
gtagacagcctcctggaggtgcaaggtttctctcctgaacaggtggaatctttctttgac
aaatacttccagagttcaccatcagacagggatgaggccttgaggcttgtccgggcccag
ccctacctgctcagtcactgctacagccctactgtgtgcctctccctctgccagctttgt
gagaagatcttggccacaaaggatccagcccaacttccctccacactcacaggcctcttt
gtcagcctcctctgctcagtactgagagctagggaaaaggagccatctgaaacctggcct
agcacctgcctggcaggcttggcagagatggcatggaaactaggtcggagacattgcaat
gtcctgagagaggaccagttcccctccacagaagtgaaggaatttgccattttgggggat
tttgtgtggccactcccaacagccagggaaccagagatggccttctctacctttctcctg
cagaacttcctgggagctttgaggctggcacttagtggggaagtaagagacaaagacctc
cccagatacctagccctgacccctagaaagaagaaaccctatgacaactggctggagagg
gtaccccacttcctgactgggcttctcttccaacccctgtcctcttgccttggacccctt
ggtgggattaagcaggttgggcttgtatgcaagaggcagaaggtactcttgaactatctg
acccgactacagcctgggacactgggccctgggaggctccttgaactgttgcattgtgcc
catgaggcaactgacagtcacctatggcagcatgtaacagctggactaccctcctgcctt
tccttctggggagtacgcctgaccccaccagatgtgcatgttttgggtgaggccctaaaa
gcagctggcaaagacttctccttggatctcaggaacacttccatcgacctgcatgggcta
gggatccttgttcagcttggttgtgtcacctgcttcagggcatctctgagtgacacagtg
tggctgtgggaatcccttcggcagagtggggaatatgaactattccgaagatccactgag
aagttcaccattgatcctttcaaggtcaagtccatgaaggacgtggaggacctttgtagc
ctggtgcatatccaaggctcaggaaatggtcctacagaggcctgtgatcctcttcctgct
gtccgagacctgaagaagcttgagtttgcgcttggcccagtgttgggtccccagggcttt
ccaaaattggttaagatacttgcagctttttcatcccttcagcatttggacctggacacc
ctgagtcagaacaagattggagatgaaggtgtatctcagctctctgccatctttccagag
ctaaaggctttggaaaccttgaacttgtctcagaatagcatcactgatgtgggagccatg
gagttggccaaggctctgccatcgctggcaacatcccttgttacactgagcttgtacaac
aactgcatctgtgatactggagccgagaacctcgctagcgtgcttcccaacatggtgtcc
ctgagggtgctggatgtccagtacaacaagttcacaagggcaggagcccagaagctcaca
accagtctgaagaaatgtccacatattgagacattggcgatgtggaaccccaccattcct
tatggggttcaggaacatctgcaacagcaggactcccggataagcttgcggtaa
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integrated database retrieval system
