Trichosurus vulpecula (common brushtail): 118833832
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Entry
118833832 CDS
T10126
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118833832 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118833832 (XAB2)
03041 Spliceosome [BR:
tvp03041
]
118833832 (XAB2)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118833832 (XAB2)
Spliceosome [BR:
tvp03041
]
Complex B
Other components
Prp19-related factors
118833832 (XAB2)
Complex C
118833832 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
TPR_15
TPR_16
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_1
RPN7
NRDE-2
Motif
Other DBs
NCBI-GeneID:
118833832
NCBI-ProteinID:
XP_036597139
LinkDB
All DBs
Position
1:complement(50426999..50438103)
Genome browser
AA seq
863 aa
AA seq
DB search
MPEIGDAAPAEAKLKARPERPDLFFEEEDLQYEEEILRNPFSVKCWFRYIEFKQSASQAV
LNLLYERALKELPGSYKLWYHYLKARRAQVKRRCVTDPAYEDVNNCHERALVFMHKMPRL
WLDYCQFLMEQGRITRTRRTFDRALRALPITQHSRIWPLYLRFVRSHPLPETAVRVYRRF
LKLSPESAEEYIEYLRSIDRLDEAAQRLATVVNDERFVSKEGKSNYQLWHELCDLISQNP
DKVQSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDF
TQVFDSYAQFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQ
NPHHVHEWHKRVALHQGRPREVINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLD
DARTILEKATKVNFKQVEDLASVWCEYGEMELRHDNYDQALRLLRKATALPARRAEYFDG
SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYERILDLRIATPQIVINYAMFLEEHS
YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA
KTLYLLYARLEEEWGLARHAMAVYERATRAVEPSQQHEMFNIYIKRAAEIYGVTHTRSIY
QKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGTFWQTWKDFEI
RHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGMDDMKLL
EHRAEQLAAEAERDQPSRSQGKILFVRSDASRTELAELAQQANPEEIEIGEEEEEEEEEL
QPNEVPLEQQSVPATVFGSLKED
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgccggagattggggatgcagccccagcggaggcaaagctgaaggctcggcctgagagg
cccgacctcttctttgaagaggaggatttgcagtatgaggaggaaatccttcgcaaccct
ttctctgtcaagtgttggtttcggtacatcgagttcaagcagagtgcctcgcaggcagta
ctcaatctgctgtatgagcgagccctcaaggagctgcctgggagttacaagctatggtac
cactacctgaaagcccgtcgggcccaggtgaagcgtcgctgcgtgaccgaccctgcctac
gaggatgtcaacaactgccacgagcgggccttggtcttcatgcacaagatgccgcgtctg
tggttggattactgccagttcttgatggagcagggacgcatcactcggacccggcgcacc
tttgaccgtgccctgagggctctgcccatcactcagcactcacgcatctggcccctctat
cttcgcttcgtacgttcccaccctctgcctgagaccgcagttcgtgtgtaccgccgcttc
ctcaagctgagccctgagagcgcagaggagtacattgagtacctgcgctccatcgaccgg
ctggatgaggcagctcagcgcctggcaactgtagtcaatgatgaaagatttgtctccaag
gaaggaaagtcaaactaccagctgtggcatgaactgtgcgacctgatctcccaaaatcct
gacaaagtgcagtccttaaatgtgggcgccatcatccgaggaggcctcacccgcttcact
gaccagcttggcaagctctggtgctcgctggccgactactacatccgaagtggacatttc
gagaaggcccgtgatgtgtatgaggaggcgatccagacggtaatgactgtacgagacttc
acgcaggtctttgacagctatgcccagtttgaggagagcatgattgcggccaagatggag
acaacttcagagctagggagggaggaagaagatgacgtggacctggagctacgtttggca
cgctttgagcaactcatcagccgccggcctctcctcctcaatagcgttctgctgcgccag
aacccccaccacgtccatgagtggcacaagcgagtggcactacatcagggccggcccaga
gaggtcatcaacacatacacagaggctgtgcagaccgtggatcccttcaaggccacaggc
aaaccccacacactgtgggtcgcctttgccaagttctatgaggataacgggcagctggat
gatgcccgcaccatcctagagaaggccaccaaagtgaacttcaaacaggtggaggatttg
gccagcgtgtggtgtgagtacggcgagatggagctgagacatgacaactatgaccaggcc
ctgcggctgctgcggaaggcaactgccctgcctgcccgccgggccgagtactttgatgga
tctgagcctgtgcagaatcgtgtctacaagtccttgaaggtgtggtctatgctggctgac
cttgaggaaagtctgggtaccttccagtccaccaaggccgtgtatgagcggatcctggac
ctacgcatcgccaccccgcagatcgtcatcaattatgccatgttcctggaggagcacagc
tactttgaggaaagcttcaaggcctatgagcggggcatctcactgtttaagtggcccaat
gtgtcagatatctggagcacatacctgaccaagtttatcgcccgttatggaggccgcaag
ctggagcgggcccgggacctgttcgagcaggcactggatggctgcccccccaaatatgcc
aaaactctctacctgttgtatgcccggctagaggaagagtgggggctggcccgccatgcc
atggccgtgtatgagcgtgccacccgtgctgtggagccctcccagcagcatgaaatgttc
aacatctacatcaaacgtgccgccgagatctacggtgtcacccacacccgcagcatctac
cagaaagccatcgaggtgctgtcagatgagcatgcacgagaaatgtgtcttcgttttgct
gacatggaatgtaaactgggggagattgaccgagcccgcgccatctatagcttctgctct
cagatctgcgatcctcggacaacaggaacattctggcaaacgtggaaggactttgagatc
cgccatgggaatgaagacaccatccgtgagatgcttcggatccggcgaagcgttcaagcc
acatacaacacacaagtcaacttcatggcctcgcagatgctgaaggtgtacagcaatgcc
acaggcaccgtgtctgaccttgcccctggacagagtgggatggacgacatgaagctgctg
gagcaccgagcagagcagctggcagcagaggcagagcgggaccagccttcccgctcacag
ggcaagatcctctttgtcaggagtgacgcgtcccgcactgagctggctgaactggcccag
caggccaaccccgaggagattgagataggggaggaggaggaggaagaggaggaggagctg
cagcccaatgaggtgcccctggagcagcagagcgtgccagccaccgtcttcggaagcctg
aaagaagactga
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