Trichosurus vulpecula (common brushtail): 118834598
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Entry
118834598 CDS
T10126
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03015
mRNA surveillance pathway
tvp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118834598 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
118834598 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118834598 (PABPC1)
03041 Spliceosome [BR:
tvp03041
]
118834598 (PABPC1)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118834598 (PABPC1)
mRNA cycle factors
Stress granule specific factors
118834598 (PABPC1)
Spliceosome [BR:
tvp03041
]
Complex C
Other components
Complex C specific factors
118834598 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
118834598
NCBI-ProteinID:
XP_036597940
LinkDB
All DBs
Position
1:145750407..145766219
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAAY
YPASQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRV
ANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ
EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccctatggcctcgctctacgtgggggacctgcacccc
gatgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctttccatc
cgggtctgcagggacatgatcacccgccgctccctgggctacgcctatgtcaacttccag
cagccggcggacgctgaacgggcattagatacaatgaattttgatgtcattaagggcaag
ccagtgcgtatcatgtggtctcaacgtgatccatcactacgtaaaagtggtgtgggcaat
atattcatcaaaaatttggataaatccattgataataaagcattgtatgatacattttct
gcttttggaaacatcctttcttgtaaggtggtatgtgatgaaaatgggtcaaagggctat
ggatttgtacactttgagacccaagaagctgctgaaagagctattgaaaaaatgaatgga
atgcttcttaatgatcgaaaagtcttcgttggtcgatttaaatcccgtaaagaaagagaa
gcagaacttggagctagagcaaaagagttcaccaatgtttacatcaaaaattttggtgaa
gacatggatgatgaaagactgaaggagctctttggcaagtttggacctgctttaagtgta
aaagtaatgactgatgaaagtggaaaatccaaaggttttggctttgtgagctttgaaaga
catgaagatgcacaaaaagctgtagatgagatgaatggaaaagaactgaatggaaaacaa
atttatgttggccgagcccagaaaaaagtggaaagacagacggaactcaagcgcaaattt
gaacaaatgaagcaggataggatcaccagataccagggtgttaacctgtatgtgaaaaac
cttgatgatggtattgatgatgagcgattgcgaaaagagttctcaccatttggtacaatc
acaagtgcaaaggtgatgatggaaggtggccgcagcaaagggtttgggtttgtatgtttc
tcttcgccagaggaagccaccaaagcagtcacagaaatgaatggcaggattgttgccact
aagccattgtatgtagctttagcccagcgcaaagaggagcggcaggctcacctcacaaac
cagtatatgcagagaatggcgagcgtcagagctgtgcccaaccctgtaatcaacccctat
cagcctccttcaggttacttcatggcagctattcctcagactcagaaccgtgctgcatac
tatcctgctagccaaattgctcaactcagaccaagtcctcgctggactgctcagggtgcc
agacctcatccattccagaacatgcccggtgctatccgcccagcagctcctaggccacca
tttagtacaatgagaccagcttcttcacaggttccacgagtcatgtcaacacagcgtgtt
gcaaacacatcaactcagacaatgggtccacgtcctgcagctgctgctgctgcagctact
cctgctgtccgcacagttccacagtataagtatgctgcaggtgttcgcaatcctcaacag
catcttaatgcacaaccacaggttaccatgcagcagcctgctgttcatgtgcaaggtcag
gaacctttaactgcttccatgttggcatctgcccctcctcaagagcaaaagcagatgttg
ggtgaaaggctgtttccactcatccaggccatgcacccttccctggccggtaaaatcact
ggcatgttgctagaaattgacaactctgagcttcttcatatgcttgagtctcctgagtct
cttcgctccaaggttgatgaagccgtagccgtactgcaagctcaccaagctaaagaagct
gcccagaaagcagttaacagtgccactggcgttccaactgtttaa
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