Trichosurus vulpecula (common brushtail): 118838844
Help
Entry
118838844 CDS
T10126
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118838844 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvp03041
]
118838844 (SF3B1)
03036 Chromosome and associated proteins [BR:
tvp03036
]
118838844 (SF3B1)
Spliceosome [BR:
tvp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
118838844 (SF3B1)
Complex B
118838844 (SF3B1)
Complex C
U2 SnRNP specific factors
118838844 (SF3B1)
Chromosome and associated proteins [BR:
tvp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
118838844 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
118838844
NCBI-ProteinID:
XP_036602110
LinkDB
All DBs
Position
2:complement(259687656..259741503)
Genome browser
AA seq
1303 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEDQGVGLDSTGYYDQEIYGGNDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKSGYQPTVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGASSQPPSKRKRRWDQTADQTPGATPKKLSNWDQAETPGHTPSLRWDETPGRAKG
SETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTER
DTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG
TPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGY
VPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVD
VDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS
PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA
KAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQAR
HTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGI
ESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPD
EEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELA
NKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQ
EQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVV
MKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLT
PILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTF
GYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL
NVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYG
FGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKV
RDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaactcacgaagatattgaagcacagattcgagaaatccaaggg
aagaaggcagctcttgatgaagatcaaggagttggccttgattctacaggttattatgac
caagaaatttatggtggtaatgacagcagatttgctggctacgtgacatcaattgctgca
actgaactagaagatgatgatgatgactactcctcatctactagcctgcttggtcagaag
aagtcaggataccaacccacagtggcattgcttaatgacataccacagtcaacagaacag
tatgacccatttgctgaacaccgtcctcccaagattgcagaccgtgaagatgaatataaa
aagcacaggcgaactatgataatttctccagagcgtcttgatccttttgcagatggaggc
aagacacctgatcctaaaatgaatgctaggacgtatatggatgttatgcgagaacagcat
ttgactaaagaggagagggaaattaggcaacaactagcagaaaaagcaaaagctggagaa
cttaaagttgtcaatggtgcatcatcccagcctccttcaaaacgcaaaaggcgttgggat
cagacagctgatcagactcctggtgcaactccaaaaaagctctcaaactgggatcaagca
gagactcctgggcatacaccttccttgaggtgggatgaaacacctggtcgtgcaaagggt
agtgagacacctggagcaacacctggctcaaaaatatgggatcctactcctagccacacc
ccagcaggagcagctactcctggacgtggtgatacacctggccatgcaacaccaggccat
ggaggtgcaacttcaagtgcacgtaaaaacagatgggatgagacccctaaaactgagaga
gatactcctggtcatggaagtgggtgggctgagactcctcgtacagatcgtggtggagat
tcaattggtgaaacaccaactcctggagcaagcaaaagaaagtcacgttgggatgaaaca
ccagctagtcagatgggtgggagcactcctgttttgactcctggtaaaacaccaattggc
acacctgctatgaacatggcgacacctactccaggccacataatgagcatgacacctgaa
cagcttcaggcatggaggtgggagagagaaattgatgagagaaatcgtccactttctgat
gaagagctggatgctatgtttccagaaggatataaggtactccctccacctgctggctat
gttcctattcgtactccagctcggaagctgacagcaactcctacacctttaggtggcatg
actggattccacatgcaaactgaagataggactatgaaaagtgttaatgatcaaccatct
ggaaatcttccatttttaaaacctgatgatattcaatactttgataaactgttggtggat
gtagatgaatcaacacttagtccagaagaacaaaaagagagaaaaataatgaaattactt
ttaaaaatcaagaatggcacacctccaatgagaaaggctgcattgcgtcaaatcactgac
aaagctcgtgaatttggagctgggcctttgtttaatcagattcttccattgctgatgtct
ccaacacttgaagatcaggaacgtcatttgctcgtaaaagttattgatagaattttgtat
aagctagatgatttggttcgaccatatgtacataagatccttgtggttattgaaccacta
ttgattgatgaagattactatgccagagtggaagggagagagataatttcaaatttggct
aaggctgctggcttggcaaccatgatttccactatgcgacctgatattgataacatggat
gaatatgtccgtaacacaacagctcgagcttttgctgttgttgcatctgccttgggcatt
ccttcgctgttgcccttcttgaaagctgtgtgtaagagcaagaagtcctggcaggctagg
catactggtattaagattgtacagcaaattgctattcttatgggttgtgccatcctccct
catctcagaagtttagttgaaatcatcgagcacggtcttgtggatgaacaacagaaagtc
cggaccattagtgctttggctatcgctgctctggctgaagcagctactccttatggcatt
gaatcttttgattctgtgttgaagcctttgtggaaaggtatccgccagcacagaggaaag
ggcttggctgccttcttgaaagctattggataccttattcctctcatggatgcagaatat
gcaaactactatactagagaagtgatgttaatccttatcagagaattccaatcgcctgat
gaagaaatgaaaaaaattgtgttgaaggtggtaaagcagtgttgtggaacagatggtgta
gaagcaaattatatcaaaacagagattcttcctccttttttcaaacatttttggcaacac
agaatggcgttggaccgaagaaattacagacagttagtggataccacagtggagttggca
aacaaagtaggtgcagcagaaattatttcccggattgtggatgatctgaaagatgaagct
gagcagtacaggaaaatggttatggaaactattgagaaaataatgggaaacttgggtgca
gcagatattgaccacaaacttgaagagcagcttattgatggcatcctttatgcctttcag
gaacagaccacagaggactcagtgatgttgaatggttttggcacagtagtcaatgccctt
ggcaaaagagtcaaaccatatttgcctcagatctgtggtacggttttgtggcgtttgaac
aacaaatcagccaaagtcagacaacaggctgctgacctcatctctcgtactgctgttgtg
atgaaaacttgtcaagaggaaaaattgatgggacatttgggtgttgtcctgtatgagtac
ttgggtgaagagtaccctgaagtattgggaagcatccttggagcactgaaggccattgtg
aatgtaataggtatgcacaagatgacgccaccaattaaagacttattgccaaggcttaca
ccaatcttaaagaatagacacgagaaagtacaagaaaactgtattgatcttgttggacgt
attgctgacaggggagcggaatatgtctctgcaagagaatggatgagaatttgctttgaa
cttttagagttgttaaaagctcataaaaaagctattcggagagccacagtcaacacattt
ggttatattgcaaaagccattggacctcacgatgtgttggctacgctgctaaacaatctc
aaagttcaagaaagacaaaaccgagtatgtacaacggtggccatagctatcgtagcagag
acatgttcaccattcacagtcttgcccgcgctgatgaatgagtatcgagttcctgaattg
aacgttcagaatggtgttttgaaatcactttctttcttgtttgaatatattggagaaatg
ggaaaagactatatttatgctgtaacaccattacttgaagatgctttgatggacagagat
cttgtacacagacagactgccagtgcagtggtgcagcacatgtctcttggggtttatgga
tttggttgtgaagattctcttaatcatttgttgaattatgtatggcctaatgtatttgag
acatctccccatgttattcaagcagttatgggagccctggaaggcctaagagttgctatt
ggaccatgtagaatgttgcaatactgtttgcagggtttgtttcacccagccagaaaagtc
agagatgtgtactggaagatttacaattctatctacattggttcacaggatgcactcata
gcacattatccaagaatctacaatgatgaaaaaaacacctatattcgttatgaacttgac
tatatcttataa
DBGET
integrated database retrieval system
