Trichosurus vulpecula (common brushtail): 118840079
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Entry
118840079 CDS
T10126
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03030
DNA replication
tvp03410
Base excision repair
tvp03420
Nucleotide excision repair
tvp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118840079 (LIG1)
03410 Base excision repair
118840079 (LIG1)
03420 Nucleotide excision repair
118840079 (LIG1)
03430 Mismatch repair
118840079 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tvp03032
]
118840079 (LIG1)
03400 DNA repair and recombination proteins [BR:
tvp03400
]
118840079 (LIG1)
Enzymes [BR:
tvp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118840079 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
118840079 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
118840079 (LIG1)
DNA replication proteins [BR:
tvp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
118840079 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
118840079 (LIG1)
DNA repair and recombination proteins [BR:
tvp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
118840079 (LIG1)
NER (nucleotide excision repair)
Other NER factors
118840079 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
118840079 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
Motif
Other DBs
NCBI-GeneID:
118840079
NCBI-ProteinID:
XP_036603477
LinkDB
All DBs
Position
2:15512397..15521471
Genome browser
AA seq
905 aa
AA seq
DB search
MQRSIKSFFQPKSGDKVKKQEEPPKSSKEREPASKAALKERNAREPESESPVKRPMRKVP
RVLGSEGEEEDEEVAPATPQEQDPAVPSPATSPASSDPSPSDASPTSISPAGIPKRRTAR
KQMQKRKLQELSEDQKDSKPKRLKREGGENAQGRSPEQPELNPETQPAEEAEGEAPEPQA
AASEARPGPEPKVSPRAPKAFSSFFTPRKPAAAKQAPKEVETGTEAETGKEAETGKAAEE
TSRAPPDPANYNPSKSSYHPVDDACWRPGQRVPYLAVARTFEKIEEVSARLRMIETLSNL
LRSVAVLSPEDLLPVLYLSLNQLGPPQQGLELGVGDGVLLKAVAQATGRQMEAIRAELAE
RGDVGLVVEASRSTQRTMLPLPTLTAAGVLSKLRDISRLTGNASTSKKIDIIKSLFVACR
HSESRFIARALRGRLRLGLAEQSVLAALSQAVTLTPPGQEFPPAVVDAGTGKSAEARKTW
LEEKGMVLKQTFCEVPDLDLIVPALLQHGLDQLPQHCQLTPGVPLKPMLAHPTRGIGEVL
KRFEESAFTCEYKYDGQRAQIHVLANGDVKIFSRNQEDNTGRYPDIISRIPKMKHPSVVS
CILDSEAVAWDKAKKQIQPFQVLSTRKRKEVEESEIQVQVCLYAFDLLYLNGQSLIREPL
SRRRQLLRENFIETEGEFVFATSLDTEDTEQIAEFLEQSVKDSCEGLMVKTLDTNATYEI
AKRSRNWLKLKKDYLEGIGDTLDLVVIGAYLGRGKRAGRYGGFLLAAFDEDSEEFQAICK
LGTGFSDEELEEHYQSLQALVIPAPRSYVRAEGAVPPDHWLEPSTVWEVKCADLSISPIY
PAARGLMENDKGISLRFPRFVRVREDKKPEEATSSAEVAYLYKKQQQIQNQQDSQSSDLE
PEDFY
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgatcgataaagtcatttttccagcctaagagcggggacaaagtgaagaagcag
gaggagccccccaaaagcagcaaggagagagagcctgcctccaaggctgccctgaaggag
aggaatgccagagaacctgagagtgagtcccctgtgaaaaggcctatgaggaaagtgccc
cgagtcctggggagtgaaggcgaggaggaagatgaggaggtggccccggcaaccccccag
gaacaggacccagccgtcccctccccggccacttctccagccagctccgacccttccccc
tcagatgcctcgcccaccagcatctccccagcagggatcccaaagcgtcggacagctcgg
aagcagatgcagaaacggaagctccaggagctgtctgaggaccagaaggacagtaagccc
aagaggcttaagagagagggaggggagaatgcacaaggaagaagcccagagcagcctgag
ctgaacccagagacacagccagccgaagaggccgagggggaggccccagagccacaggcc
gctgcttcggaggcaaggccgggcccagagccaaaggtgtcccctcgggcacccaaagcc
ttcagtagcttctttaccccccgaaagccagcagcagcaaagcaggccccaaaggaggtg
gagacggggacggaggcagagacggggaaggaggcagagacggggaaggctgcggaagag
acatccagggcgcccccagacccagccaactacaacccttcaaagagcagctatcacccc
gtggacgatgcctgctggagaccagggcagagggtcccctacctcgctgttgctcggacc
tttgagaaaattgaggaagtctctgctcggctccggatgatagaaactctgagcaacctc
ctccgttcagtggccgtcctgtcccccgaagacctgctccctgtcctctacctgagtctg
aaccagctggggcccccccagcaaggcctagagctcggcgtgggggatggcgtgctcctc
aaggcagtggcccaagccacggggcggcagatggaagccatacgggccgagttggcagaa
aggggagatgtggggctggtggtggaggccagccgcagcacccagcgtaccatgctgcct
ctgcccaccctgacggcagccggggtactgagcaagcttcgagatatctcccgcctcaca
ggcaatgcttccacatcaaagaagatcgacatcatcaaaagcctgttcgtcgcctgtcgc
cactcggagtcccgcttcatagccagggccctgagggggcggctacgcctaggcctcgcc
gaacagtcggtcctggctgcactctcccaggccgtgaccctcacaccccccggccaagag
ttccccccagctgtggtggatgctgggacaggcaagtcagcggaagccaggaagacttgg
ctggaggagaaaggcatggtcctgaagcagaccttctgcgaggtgcctgacctggacctt
attgtccctgccctgctccagcatgggctggaccagctgccccaacactgccagctgacc
ccaggggtacccctgaagcccatgctggcccaccctacccgtggcatcggggaggtgctg
aagcgctttgaagagtcagccttcacatgtgaatacaagtatgacgggcagagggcacag
atccacgtcctggcaaatggggacgtgaagatatttagccggaaccaagaggacaacaca
ggccgatacccggacatcatcagccgcatcccgaagatgaagcatccctctgtcgtctcc
tgcatcctggactcagaggctgtggcctgggacaaggcaaagaagcaaatccagcccttc
caggtgctcagcacccgcaaacgcaaggaggtggaggagtccgagatccaagtccaggtg
tgcctgtatgcctttgaccttctctacctcaatgggcagtccctgatccgggagccgctg
tcccggagaaggcagctgctccgagagaacttcatcgagacagagggcgaattcgttttt
gccacatctctggacacagaggacactgagcagatagccgaattcctggagcagtccgtg
aaagattcctgtgagggcctgatggtgaagaccctggacaccaatgccacatatgagatt
gccaagagatctcgcaactggctcaagctgaagaaggactatctggaaggcattggagat
actctggacttggtggtgattggggcctatttgggccggggaaaacgggccggacgatat
gggggcttcctcctggctgcttttgatgaggacagtgaagagttccaggccatctgcaag
ctgggcacaggcttcagtgatgaagaattagaggagcattaccagagcctccaggccctc
gtgattcctgctcctcgttcctatgtccgggccgaaggggctgtaccccctgaccactgg
ctagaaccaagcactgtatgggaggttaaatgtgctgatctctccatctccccgatttat
ccagcagcccgagggttgatggagaatgacaagggcatctccctgcgtttcccccgattt
gtccgagttcgagaagacaagaaaccagaagaggcaacctccagtgccgaggtggcctat
ttgtataagaagcagcaacagattcagaaccagcaggactcccagtcctctgacttggaa
cctgaagatttctattag
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