Trichosurus vulpecula (common brushtail): 118841635
Help
Entry
118841635 CDS
T10126
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
tvp Trichosurus vulpecula (common brushtail)
Pathway
tvp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118841635 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tvp03041
]
118841635 (SNRNP200)
Enzymes [BR:
tvp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118841635 (SNRNP200)
Spliceosome [BR:
tvp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118841635 (SNRNP200)
Complex C
U5 SnRNP specific factors
118841635 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
DUF603
Motif
Other DBs
NCBI-GeneID:
118841635
NCBI-ProteinID:
XP_036605106
LinkDB
All DBs
Position
3:complement(290241570..290284624)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMESDPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQSGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGPEEQLLPVEKLQKYAQAGFEGFKT
LNRIQSKLYRAALDTDENLLLCAPTGAGKTNVALMCMLREIGKHINVDGTINVDNFKIIY
IAPMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQERVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPAERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSDHIKRCTDKGVE
SVFDIMEMEDEERNTLLQLSDNQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgcccggagcctgcagtatgagtacaaggctaactccaaccttgtc
ctccaagccgaccgctcccttattgaccgaacccggcgtgatgagccgacaggggaggta
ctttcactggtgggaaaactggagggcactcgaatgggtgataaggcacaaaggaccaaa
ccccagatgcaggaggagagaagagccaaacgaagaaagcgtgatgaggacaggcatgac
atcaataagatgaaaggctatacactgctgtcagaaggcattgatgagatggtgggtatc
atctataaacccaaaaccaaggagacccgtgaaacctatgaggtgctactcagctttatc
caggcagcactgggggatcagccacgggatatcctatgtggtgcagcagatgaggtctta
gctgtcttgaaaaatgagaaactccgtgacaaggaaagaagaaaagagattgacttattg
ctgggccagacagatgatacacgataccatgtattggtgaatttgggcaaaaagattaca
gattatggtggagacaaggaaatccagaatatggatgataacattgatgagacatatggt
gtgaatgtccagtttgagtcagatgaagaggaaggtgatgaggatgtgtatggggaagtg
cgagaagaggcatctgatgatgatatggaaggggatgaggccgttgtgcgttgcaccctc
tcagccaatcttgtagcctcaggtgagctaatgagctccaagaaaaaggatctacatcct
cgggacattgatgccttttggctacagcgacaacttagccgtttctacgacgatgccatc
gtatctcagaagaaggcagatgaagtgctagagatcttgaagacagccagtgatgatcga
gagtgtgagaatcagctggttctgctcctgggtttcaacacattcgattttattaaagtg
ctgagacaacacaggatgatgatcttatattgtactttgctggcaagtgcacagagtgaa
gctgaaaaggagaggatcatgggaaagatggagtctgatccagagctctccaagttcctc
taccaactccacgaaactgagaaggaggatctgatccgggaggagcggtcccgaagggag
cgtgtacgtcagtcccgaatggacacagatctggaaaccatggatctagatcagagtggg
gaggcactggccccaaggcaggttctagacttggaggatctggttttcacccaggggagc
catttcatggctaataaacgctgtcaacttcctgatgggtccttccgccgccagcgcaag
ggctatgaagaggtacatgtacctgctctgaagcccaaaccctttggtcctgaagagcaa
ttgctaccagtagagaagctacaaaagtatgcccaggctggatttgagggctttaaaaca
ctcaatcggatacagagcaaactctaccgcgctgccttggatactgatgagaatctgttg
ctgtgtgctcccacgggtgctggcaaaactaacgtggcattgatgtgtatgctccgggag
attgggaagcacattaatgtggacggtaccatcaatgtggataacttcaagatcatatac
attgctcctatgcgttcgctggtacaagagatggtgggcagctttggaaagcgccttgca
acatatggtattaatgtggctgagctgacaggtgatcaccagctgtgcaaagaagaaatt
aatgccactcagatcattgtctgcacccccgagaagtgggatatcattacccgaaagggt
ggggagcgtacctacacccagctagtacgcctcatcatcttggatgaaatccatcttctc
cacgatgacagaggtcctgtcttagaagctttggtagccagggctatccgaaacattgag
atgacccaagaacgtgttcggctcattgggctcagtgctaccctcccaaactatgaggat
gttgctactttccttcgtgtagaccctgccaaaggccttttttactttgacaacagcttc
cgtccagtacctcttgaacagacatatgtggggatcacagagaagaaggcaatcaaacgt
ttccagatcatgaacgagatagtttatgagaagatcatggagcatgctgggaaaaaccag
gtgctagtttttgtccactctcgaaaggagacgggaaagacagccagggccattcgggat
atgtgtctggagaaggatacgctgggcctgttccttcgagagggctctgcctccactgag
gttcttcggacagaagctgagcagtgcaagaatttggaattaaaggatctcttaccttat
ggctttgccattcatcatgctggtatgaccagagttgaccgaacacttgtggaagatctt
tttgctgacaaacacattcaggttctcgtctctacagcaactctggcttggggtgtaaac
ctccctgcacatacagtcatcattaaaggcacacaagtgtatagcccagaaaaggggcgc
tggacagaattgggagcactggacattctgcagatgctgggtcgtgctggacgaccacag
tatgatacaaaaggggaaggcatcctcattacatctcatggggagctgcagtactatttg
tccctactcaatcagcagctacctattgagagccagatggtatcaaagctgcctgacatg
cttaatgctgagatcgtcctgggaaatgtccagaatgcaaaggatgcagtaaattggctg
ggatatgcctacttatatatccgaatgctccgttccccaaccctctatggcatttcacat
gatgaccttaagggggatcccctgctggatcagcgccggctagatttggtgcacactgca
gctctcatgctggacaagaacaatttggtcaaatatgataagaagactggcaacttccag
gtgacggagcttggccgtattgccagtcactattatatcaccaatgatacagtgcagacc
tataatcagctgttgaaaccaactctgagtgaaattgagctctttagagtgttctcactt
tcttctgaattcaaaaacatcactgtgagagaggaagagaagctagagcttcagaaatta
ctagaaagggttcctattcctgtgaaggagagcattgaggagcccagtgcaaagatcaat
gtgcttctccaggcctttatttcgcagctaaagcttgagggttttgcactgatggcagac
atggtatatgttacgcagtcggctggtcggttaatgcgtgccatttttgaaatcgtctta
aatcgaggttgggcacagctgacggacaagactctgaatctctgcaagatgattgacaag
cgcatgtggcagtctatgtgtcccttgcgccagttccggaagctccctgaggaggtggta
aagaagattgagaagaaaaacttccccttcgagcggctgtatgacctgaatcacaatgag
ataggtgaacttatccgcatgcccaagatggggaagaccatccacaaatatgtccacctt
ttccccaaattggaactctcagtgcatttgcagcctatcactcgttctaccctgaaagta
gagctgaccataacccctgatttccagtgggatgaaaaggtgcatggttcatctgaggca
ttctggattctggtagaagatgttgacagtgaagtgatcctgcaccatgagtatttccta
ctcaaggccaagtatgcacaggatgagcatctcatcacattctttgttcctgtgtttgag
ccacttcctccacaatactttattcgtgtggtgtcagaccgctggctatcttgtgagacg
cagttgcctgtctctttccgtcacttaatcttacctgagaagtacccgcctcccacagaa
cttttagacttacagccattgcctgtgtctgccctgaggaacagtgcctttgagagtctc
taccaggacaaattcccattcttcaatcccatccagactcaagtgtttaataccgtgtac
aatagcgatgacaacgtatttgtgggggcccccacgggcagcgggaagaccatctgtgct
gaatttgccattttaaggatgctcttgcagaactcggaaggtcgctgtgtctatatcacc
cccatggaggcgctagcagaacaggtgtatatggattggtatgagaaattccaggagcga
cttaacaagaaggtagtactgctgacaggagagaccagcacagacctgaagcttttgggc
aaaggcaatatcattatcagcactcctgaaaagtgggacatcctctcccgccgctggaag
caacgcaagaatgtccagaatgtcaacctctttgtggtggatgaggtccacctcattggg
ggtgagaatgggcctgtacttgaagtgatttgctctcgtatgcgctacatctcctcccag
atagagcgacccatccgcatcgtggcacttagttcctccctttctaacgctaaggatgtt
gcccattggttaggctgtagtgccacttccacgtttaattttcaccccaatgtacgtcct
gtccccttggaactgcatattcagggcttcaacattagccacacacagactcgtctacta
tctatggccaagccagtgtaccatgccattacaaagcattcacccaagaagcccgtcatc
gtttttgtcccgtcacgtaagcagacccgcctgactgccattgacatcctcaccacctgt
gcagcagacattcagcggcaaaggtttttgcattgcacagagaaggatctaatcccatat
ctggagaagctgagtgacagcaccctcaaggagacactcctgaacggcgtgggctacctg
catgaggggctcagccctgcagagcggcgcctggtggagcagctcttcagctcaggtgcc
atccaagtggttgtggcctctcgaagcctatgctggggcatgaatgtggctgcccatctg
gtgatcatcatggacacacagtactataatggcaagatccatgcttatgtggattatcct
atctatgatgtgctacaaatggtgggtcatgccaatcgacctctacaggatgatgaagga
cgatgtgtcatcatgtgtcagggctccaaaaaagatttcttcaagaaatttctatatgag
ccactgccagtagagtctcatctagaccactgcatgcatgaccacttcaatgctgagatc
gtcaccaagaccattgagaacaagcaggacgcagtagattacctcacctggaccttcctg
taccggcgcatgacccagaaccccaactactacaacctacagggcatctcccatcgtcac
ttgtcagatcacttgtcagaactggtagagcagacattaagtgacctggagcagtccaaa
tgtatcagtattgaggatgagatggatgtggcacccctgaacttgggcatgattgctgct
tactactacatcaactataccaccattgagctcttcagtatgtctctgaatgccaagacc
aaggtgcgtgggctcatcgagatcatttccaatgcagcagagtatgagaacattcccatc
cgacatcatgaggacaacctgctacggcagttggctcagaaggttcctcataagctgaac
aatcccaagttcaatgatccccacgttaagaccaacctgttgcttcaggcccatttgtcc
cgtatgcagctaagtgctgaattgcaatctgacactgaggagatccttagtaaggcaatc
cggctcatccaagcctgtgttgatgtgctctctagcaatggttggctgagccctgctctg
gcagctatggaactcgctcagatggttacccaagccatgtggtccaaagactcctacctg
aagcagcttccacacttcacctctgaccacatcaaacggtgcacagacaagggagtggag
agtgtctttgacattatggagatggaagatgaagaacgcaacacactgcttcaactgtca
gacaatcagattgctgatgtagcccgcttttgtaatcgctatcccaatattgaattgtct
tatgaggtggtggagaaagagagcatccgcagtggtgggccagttgttgtgctggtgcag
ctggagcgagaagaggaagtcacaggccctgtcattgctcctctattcccacagaaacgt
gaggagggctggtgggtggtgattggagactccaaatccaatagccttatctccatcaaa
aggttgacactgcagcagaaggccaaggtgaagcttgattttgtggctccagccactggt
gcccataattacactctctactttatgagtgatgcctacatgggttgtgaccaggaatac
aaattcagtgtggatgtgaaggaagcagaaagcgatagtgattctgactga
DBGET
integrated database retrieval system
