Trichosurus vulpecula (common brushtail): 118842352
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Entry
118842352 CDS
T10126
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
tvp Trichosurus vulpecula (common brushtail)
Brite
KEGG Orthology (KO) [BR:
tvp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tvp03019
]
118842352 (PTBP1)
03041 Spliceosome [BR:
tvp03041
]
118842352 (PTBP1)
Messenger RNA biogenesis [BR:
tvp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
118842352 (PTBP1)
Spliceosome [BR:
tvp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
118842352 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
118842352
NCBI-ProteinID:
XP_036605820
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All DBs
Position
1:complement(53125549..53157317)
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AA seq
557 aa
AA seq
DB search
MDGIVPDITVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDNRSTGVPSRV
IHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEASNTMVSYYTTVTPV
LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAADAGMAVAGQ
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYSDPVSAQHAKLS
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAP
GIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLTGA
GNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL
NGQKLHGKPIRITLSKHQTVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA
TLHLSNIPPSISEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNH
DLGENHHLRVSFSKSTI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtcccagatataacagttggtacaaagcggggatctgacgagcttttc
tctacttgtgttactaacggaccctttatcatgagcagcaactctgcttctgcagctaat
ggaaatgacagcaagaaattcaaaggtgataacagaagcacaggagtcccttccagagta
atccatgtgagaaagctcccaggtgacgtcacagaagctgaggttatttccctgggatta
ccatttggcaaggtcaccaatcttctaatgctgaaaggcaaaaaccaggctttccttgaa
atgaacacagaagaggcatcgaacactatggtaagttactataccacagtgactcctgtc
ctccgaagccagcctatctacattcagttctcaaaccacaaggagctcaaaacagacaac
tctccaaaccaagcacgtgcccaggcagcacttcaagctgtaaactctgttcagtcagga
aatttggccctctctgcctctgctgcagcagctgatgcaggaatggcagtggctggtcag
agtccagttttgaggatcatcgtagaaaatctcttctacccagtcactttggatgtactt
caccagattttctctaagtttggcacagtgctgaaaataataaccttcaccaagaacaac
cagttccaggctctgttacaatattctgacccagtgagtgcccagcatgctaagttgtct
cttgatgggcagaatatctacaatgcctgttgtacattgcgcattgacttctctaaactc
accagcctcaatgtgaaatacaacaatgataaaagcagagactatacccgcccagatctg
ccttctggtgacagccagccttctcttgaccagactatggcagcagcctttggtgcacct
ggtataatctctgcctctccatacgcaggagctggtttccctcccacctttgcaattcct
caagctgcaggactctccgttccaaatgttcatggagcccttgctccactggcgattcca
tcagcagctgctgctgcggctgccgccgggcgaattgctattcctggcctcacaggggca
gggaattctgtcttgctggttagcaacttgaacccagagagagttacaccccaatgcctc
tttattcttttcggcgtttatggtgatgtccagcgagtgaagatcttattcaataagaaa
gagaatgccttggttcagatggcagatggaaaccaagcccagcttgctatgagtcatcta
aatggacagaaacttcatgggaagccaatcagaatcactctttccaagcaccagacagtt
caacttccccgtgaaggacaggaagaccaaggtttgactaaagactatggaaactcaccc
ctccaccgtttcaagaaaccgggctccaaaaactttcaaaatatcttccctccatctgct
acactgcacctttctaatataccgccttctatatctgaagaagaccttaagatgttgttc
tcaagtaatggtggaatggtcaaaggattcaagttcttccaaaaggaccggaagatggct
ctgatccagatgggttcagtggaagaggccattcagtcccttattgaccttcataaccat
gaccttggagaaaaccaccaccttcgtgtgtccttctcaaagtctaccatttaa
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